Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rsmC and Leu_trna are separated by 189 nucleotides Leu_trna and yjjZ are separated by 38 nucleotides yjjZ and fhuF are separated by 140 nucleotides
NIAGMN_09150: rsmC - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 1,774,750 to 1,775,781
rsmC
NIAGMN_09155: Leu_trna - tRNA-Leu(cag), at 1,775,971 to 1,776,057
_trna
NIAGMN_09160: yjjZ - Uncharacterized protein YjjZ, at 1,776,096 to 1,776,332
yjjZ
NIAGMN_09165: fhuF - siderophore-iron reductase FhuF, at 1,776,473 to 1,777,261
fhuF
Position (kb) 1775
1776
1777 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 1774.993 kb on + strand, within rsmC at 1774.993 kb on + strand, within rsmC at 1774.993 kb on + strand, within rsmC at 1774.993 kb on + strand, within rsmC at 1774.993 kb on + strand, within rsmC at 1774.994 kb on - strand, within rsmC at 1774.996 kb on + strand, within rsmC at 1774.997 kb on - strand, within rsmC at 1775.042 kb on + strand, within rsmC at 1775.043 kb on - strand, within rsmC at 1775.043 kb on - strand, within rsmC at 1775.131 kb on + strand, within rsmC at 1775.176 kb on + strand, within rsmC at 1775.176 kb on + strand, within rsmC at 1775.177 kb on - strand, within rsmC at 1775.233 kb on + strand, within rsmC at 1775.234 kb on - strand, within rsmC at 1775.277 kb on + strand, within rsmC at 1775.278 kb on - strand, within rsmC at 1775.343 kb on + strand, within rsmC at 1775.343 kb on + strand, within rsmC at 1775.447 kb on + strand, within rsmC at 1775.447 kb on + strand, within rsmC at 1775.447 kb on + strand, within rsmC at 1775.538 kb on + strand, within rsmC at 1775.539 kb on - strand, within rsmC at 1775.628 kb on + strand, within rsmC at 1775.628 kb on + strand, within rsmC at 1775.628 kb on + strand, within rsmC at 1775.628 kb on + strand, within rsmC at 1775.654 kb on + strand, within rsmC at 1775.655 kb on - strand, within rsmC at 1775.744 kb on - strand at 1775.779 kb on + strand at 1775.780 kb on - strand at 1775.780 kb on - strand at 1775.783 kb on + strand at 1775.783 kb on + strand at 1775.783 kb on + strand at 1775.784 kb on - strand at 1775.795 kb on + strand at 1775.832 kb on + strand at 1775.848 kb on + strand at 1775.849 kb on - strand at 1775.849 kb on - strand at 1775.878 kb on + strand at 1775.878 kb on + strand at 1775.879 kb on - strand at 1775.879 kb on - strand at 1775.896 kb on + strand at 1775.896 kb on + strand at 1775.896 kb on + strand at 1775.897 kb on - strand at 1775.897 kb on - strand at 1775.897 kb on - strand at 1775.897 kb on - strand at 1775.900 kb on + strand at 1775.900 kb on + strand at 1775.900 kb on + strand at 1775.900 kb on + strand at 1775.900 kb on + strand at 1775.901 kb on - strand at 1775.924 kb on + strand at 1775.955 kb on + strand at 1776.060 kb on + strand at 1776.060 kb on + strand at 1776.060 kb on + strand at 1776.060 kb on + strand at 1776.060 kb on + strand at 1776.066 kb on + strand at 1776.066 kb on + strand at 1776.118 kb on - strand at 1776.213 kb on + strand, within yjjZ at 1776.213 kb on + strand, within yjjZ at 1776.214 kb on - strand, within yjjZ at 1776.214 kb on - strand, within yjjZ at 1776.253 kb on - strand, within yjjZ at 1776.262 kb on + strand, within yjjZ at 1776.262 kb on + strand, within yjjZ at 1776.263 kb on - strand, within yjjZ at 1776.320 kb on + strand at 1776.321 kb on - strand at 1776.321 kb on - strand at 1776.321 kb on - strand at 1776.338 kb on + strand at 1776.339 kb on - strand at 1776.339 kb on - strand at 1776.420 kb on + strand at 1776.426 kb on + strand at 1776.480 kb on - strand at 1776.498 kb on - strand at 1776.498 kb on - strand at 1776.542 kb on - strand at 1776.558 kb on + strand, within fhuF at 1776.559 kb on - strand, within fhuF at 1776.670 kb on - strand, within fhuF at 1776.689 kb on + strand, within fhuF at 1776.700 kb on + strand, within fhuF at 1776.700 kb on + strand, within fhuF at 1776.700 kb on + strand, within fhuF at 1776.700 kb on + strand, within fhuF at 1776.700 kb on + strand, within fhuF at 1776.700 kb on + strand, within fhuF at 1776.700 kb on + strand, within fhuF at 1776.701 kb on - strand, within fhuF at 1776.701 kb on - strand, within fhuF at 1776.701 kb on - strand, within fhuF at 1776.704 kb on + strand, within fhuF at 1776.704 kb on + strand, within fhuF at 1776.705 kb on - strand, within fhuF at 1776.768 kb on - strand, within fhuF at 1776.768 kb on - strand, within fhuF at 1776.768 kb on - strand, within fhuF at 1776.769 kb on + strand, within fhuF at 1776.825 kb on + strand, within fhuF at 1776.825 kb on + strand, within fhuF at 1776.825 kb on + strand, within fhuF at 1776.826 kb on - strand, within fhuF at 1776.987 kb on + strand, within fhuF at 1777.019 kb on - strand, within fhuF at 1777.019 kb on - strand, within fhuF at 1777.027 kb on + strand, within fhuF at 1777.028 kb on - strand, within fhuF at 1777.028 kb on - strand, within fhuF at 1777.030 kb on + strand, within fhuF at 1777.037 kb on + strand, within fhuF at 1777.053 kb on - strand, within fhuF at 1777.057 kb on + strand, within fhuF
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 1,774,993 + rsmC NIAGMN_09150 0.24 -2.0 1,774,993 + rsmC NIAGMN_09150 0.24 +3.0 1,774,993 + rsmC NIAGMN_09150 0.24 -0.1 1,774,993 + rsmC NIAGMN_09150 0.24 -1.5 1,774,993 + rsmC NIAGMN_09150 0.24 -0.4 1,774,994 - rsmC NIAGMN_09150 0.24 -0.7 1,774,996 + rsmC NIAGMN_09150 0.24 -0.6 1,774,997 - rsmC NIAGMN_09150 0.24 +0.4 1,775,042 + rsmC NIAGMN_09150 0.28 +2.7 1,775,043 - rsmC NIAGMN_09150 0.28 -0.8 1,775,043 - rsmC NIAGMN_09150 0.28 -0.7 1,775,131 + rsmC NIAGMN_09150 0.37 +0.6 1,775,176 + rsmC NIAGMN_09150 0.41 +0.2 1,775,176 + rsmC NIAGMN_09150 0.41 +1.9 1,775,177 - rsmC NIAGMN_09150 0.41 -3.6 1,775,233 + rsmC NIAGMN_09150 0.47 +1.4 1,775,234 - rsmC NIAGMN_09150 0.47 +2.3 1,775,277 + rsmC NIAGMN_09150 0.51 -1.5 1,775,278 - rsmC NIAGMN_09150 0.51 -3.2 1,775,343 + rsmC NIAGMN_09150 0.57 +0.5 1,775,343 + rsmC NIAGMN_09150 0.57 -1.0 1,775,447 + rsmC NIAGMN_09150 0.68 +1.9 1,775,447 + rsmC NIAGMN_09150 0.68 +0.3 1,775,447 + rsmC NIAGMN_09150 0.68 -0.4 1,775,538 + rsmC NIAGMN_09150 0.76 +0.7 1,775,539 - rsmC NIAGMN_09150 0.76 +0.0 1,775,628 + rsmC NIAGMN_09150 0.85 +4.8 1,775,628 + rsmC NIAGMN_09150 0.85 +0.5 1,775,628 + rsmC NIAGMN_09150 0.85 +1.0 1,775,628 + rsmC NIAGMN_09150 0.85 -0.8 1,775,654 + rsmC NIAGMN_09150 0.88 +0.6 1,775,655 - rsmC NIAGMN_09150 0.88 -2.2 1,775,744 - +3.0 1,775,779 + +1.6 1,775,780 - +1.0 1,775,780 - +1.5 1,775,783 + -0.9 1,775,783 + +0.7 1,775,783 + +0.5 1,775,784 - -3.1 1,775,795 + +0.9 1,775,832 + -3.3 1,775,848 + +1.2 1,775,849 - +0.9 1,775,849 - +0.9 1,775,878 + -0.3 1,775,878 + -3.5 1,775,879 - +0.2 1,775,879 - -1.2 1,775,896 + -0.3 1,775,896 + -1.2 1,775,896 + +1.1 1,775,897 - -0.4 1,775,897 - +0.4 1,775,897 - +0.7 1,775,897 - +0.7 1,775,900 + -1.3 1,775,900 + -1.2 1,775,900 + -0.9 1,775,900 + +1.3 1,775,900 + -2.3 1,775,901 - -1.6 1,775,924 + +1.6 1,775,955 + +0.6 1,776,060 + +1.1 1,776,060 + +1.2 1,776,060 + +2.3 1,776,060 + -1.3 1,776,060 + -0.1 1,776,066 + +1.5 1,776,066 + +0.4 1,776,118 - -0.3 1,776,213 + yjjZ NIAGMN_09160 0.49 -1.3 1,776,213 + yjjZ NIAGMN_09160 0.49 -0.7 1,776,214 - yjjZ NIAGMN_09160 0.50 +1.3 1,776,214 - yjjZ NIAGMN_09160 0.50 -2.0 1,776,253 - yjjZ NIAGMN_09160 0.66 -3.5 1,776,262 + yjjZ NIAGMN_09160 0.70 +0.4 1,776,262 + yjjZ NIAGMN_09160 0.70 -0.9 1,776,263 - yjjZ NIAGMN_09160 0.70 +1.6 1,776,320 + +2.8 1,776,321 - +1.2 1,776,321 - +0.1 1,776,321 - -1.9 1,776,338 + +1.0 1,776,339 - -0.2 1,776,339 - +1.3 1,776,420 + -1.1 1,776,426 + -1.6 1,776,480 - +0.3 1,776,498 - -1.2 1,776,498 - -2.1 1,776,542 - +0.7 1,776,558 + fhuF NIAGMN_09165 0.11 -2.4 1,776,559 - fhuF NIAGMN_09165 0.11 +0.6 1,776,670 - fhuF NIAGMN_09165 0.25 +0.4 1,776,689 + fhuF NIAGMN_09165 0.27 +1.6 1,776,700 + fhuF NIAGMN_09165 0.29 +1.7 1,776,700 + fhuF NIAGMN_09165 0.29 -0.0 1,776,700 + fhuF NIAGMN_09165 0.29 +0.1 1,776,700 + fhuF NIAGMN_09165 0.29 +0.8 1,776,700 + fhuF NIAGMN_09165 0.29 -1.5 1,776,700 + fhuF NIAGMN_09165 0.29 -2.3 1,776,700 + fhuF NIAGMN_09165 0.29 -1.6 1,776,701 - fhuF NIAGMN_09165 0.29 -0.2 1,776,701 - fhuF NIAGMN_09165 0.29 -1.6 1,776,701 - fhuF NIAGMN_09165 0.29 +0.9 1,776,704 + fhuF NIAGMN_09165 0.29 -1.2 1,776,704 + fhuF NIAGMN_09165 0.29 -0.2 1,776,705 - fhuF NIAGMN_09165 0.29 +1.5 1,776,768 - fhuF NIAGMN_09165 0.37 +0.6 1,776,768 - fhuF NIAGMN_09165 0.37 +0.3 1,776,768 - fhuF NIAGMN_09165 0.37 +2.2 1,776,769 + fhuF NIAGMN_09165 0.38 +0.6 1,776,825 + fhuF NIAGMN_09165 0.45 +1.9 1,776,825 + fhuF NIAGMN_09165 0.45 -0.2 1,776,825 + fhuF NIAGMN_09165 0.45 +2.2 1,776,826 - fhuF NIAGMN_09165 0.45 +2.2 1,776,987 + fhuF NIAGMN_09165 0.65 -2.9 1,777,019 - fhuF NIAGMN_09165 0.69 -0.3 1,777,019 - fhuF NIAGMN_09165 0.69 -3.1 1,777,027 + fhuF NIAGMN_09165 0.70 -0.7 1,777,028 - fhuF NIAGMN_09165 0.70 -0.4 1,777,028 - fhuF NIAGMN_09165 0.70 +1.7 1,777,030 + fhuF NIAGMN_09165 0.71 +0.9 1,777,037 + fhuF NIAGMN_09165 0.71 -4.3 1,777,053 - fhuF NIAGMN_09165 0.74 +0.1 1,777,057 + fhuF NIAGMN_09165 0.74 +0.1
Or see this region's nucleotide sequence