Strain Fitness in Escherichia coli ECRC102 around NIAGMN_08880

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
1,723,722	+				+2.5
1,723,854	+	nhaR	NIAGMN_08875	0.11	+1.0
1,723,855	-	nhaR	NIAGMN_08875	0.11	+0.1
1,723,855	-	nhaR	NIAGMN_08875	0.11	+1.3
1,724,009	+	nhaR	NIAGMN_08875	0.28	-2.2
1,724,010	-	nhaR	NIAGMN_08875	0.28	-0.2
1,724,029	+	nhaR	NIAGMN_08875	0.30	-1.1
1,724,038	+	nhaR	NIAGMN_08875	0.31	+1.1
1,724,054	+	nhaR	NIAGMN_08875	0.33	+1.3
1,724,055	-	nhaR	NIAGMN_08875	0.33	-1.2
1,724,055	-	nhaR	NIAGMN_08875	0.33	+3.9
1,724,195	-	nhaR	NIAGMN_08875	0.49	+3.2
1,724,202	-	nhaR	NIAGMN_08875	0.49	+1.4
1,724,244	-	nhaR	NIAGMN_08875	0.54	-1.8
1,724,306	+	nhaR	NIAGMN_08875	0.61	-0.1
1,724,306	+	nhaR	NIAGMN_08875	0.61	-0.1
1,724,307	-	nhaR	NIAGMN_08875	0.61	-3.6
1,724,351	+	nhaR	NIAGMN_08875	0.66	-2.2
1,724,352	-	nhaR	NIAGMN_08875	0.66	-1.6
1,724,352	-	nhaR	NIAGMN_08875	0.66	+1.4
1,724,352	-	nhaR	NIAGMN_08875	0.66	+1.8
1,724,379	-	nhaR	NIAGMN_08875	0.69	+0.7
1,724,398	-	nhaR	NIAGMN_08875	0.71	+1.2
1,724,398	-	nhaR	NIAGMN_08875	0.71	+0.8
1,724,431	+	nhaR	NIAGMN_08875	0.75	-1.8
1,724,454	+	nhaR	NIAGMN_08875	0.77	-1.7
1,724,454	+	nhaR	NIAGMN_08875	0.77	+1.1
1,724,507	+	nhaR	NIAGMN_08875	0.83	+0.9
1,724,507	+	nhaR	NIAGMN_08875	0.83	+0.6
1,724,507	+	nhaR	NIAGMN_08875	0.83	-2.3
1,724,571	+				-1.1
1,724,572	-				-0.4
1,724,609	-				+0.0
1,724,609	-				-1.7
1,724,611	-				-0.8
1,724,625	+				+2.1
1,724,626	-				+0.5
1,724,629	-				-1.6
1,724,640	+				+2.0
1,724,640	+				+2.5
1,724,640	+				-2.4
1,724,641	-				+0.1
1,724,782	-				+0.2
1,724,815	-				+0.1
1,724,831	-				+1.6
1,724,831	-				+1.9
1,724,835	+				-1.2
1,724,862	+	nhaA	NIAGMN_08880	0.12	-0.7
1,724,862	+	nhaA	NIAGMN_08880	0.12	-0.8
1,724,863	-	nhaA	NIAGMN_08880	0.12	-2.1
1,724,863	-	nhaA	NIAGMN_08880	0.12	-2.0
1,724,863	-	nhaA	NIAGMN_08880	0.12	-1.1
1,724,869	-	nhaA	NIAGMN_08880	0.13	-0.6
1,724,869	-	nhaA	NIAGMN_08880	0.13	+3.5
1,724,869	-	nhaA	NIAGMN_08880	0.13	-1.7
1,724,872	-	nhaA	NIAGMN_08880	0.13	+2.4
1,724,872	-	nhaA	NIAGMN_08880	0.13	+1.3
1,724,872	-	nhaA	NIAGMN_08880	0.13	+0.0
1,724,915	+	nhaA	NIAGMN_08880	0.17	+1.5
1,724,916	-	nhaA	NIAGMN_08880	0.17	+2.0
1,725,265	-	nhaA	NIAGMN_08880	0.47	+0.1
1,725,265	-	nhaA	NIAGMN_08880	0.47	+1.7
1,725,267	-	nhaA	NIAGMN_08880	0.47	+0.6
1,725,267	-	nhaA	NIAGMN_08880	0.47	+0.3
1,725,283	+	nhaA	NIAGMN_08880	0.48	-2.1
1,725,322	+	nhaA	NIAGMN_08880	0.51	-1.6
1,725,361	-	nhaA	NIAGMN_08880	0.55	-0.8
1,725,361	-	nhaA	NIAGMN_08880	0.55	-2.2
1,725,365	+	nhaA	NIAGMN_08880	0.55	-0.9
1,725,382	-	nhaA	NIAGMN_08880	0.57	-2.0
1,725,540	-	nhaA	NIAGMN_08880	0.70	-2.0
1,725,544	-	nhaA	NIAGMN_08880	0.70	+2.4
1,725,544	-	nhaA	NIAGMN_08880	0.70	+1.2
1,725,560	-	nhaA	NIAGMN_08880	0.72	-1.7
1,725,585	+	nhaA	NIAGMN_08880	0.74	-1.1
1,725,835	-				+1.4
1,725,835	-				+0.4
1,725,840	+				+0.0
1,725,841	-				-0.0
1,725,841	-				+2.2
1,725,965	-				+0.4
1,725,965	-				-1.9
1,725,995	-				-2.2
1,726,078	+				-1.7
1,726,126	+				-0.8
1,726,162	+				-1.2
1,726,173	+				+3.0
1,726,192	+				-0.3
1,726,312	+				-0.7
1,726,312	+				-1.4
1,726,312	+				+0.8
1,726,314	+				+1.3
1,726,314	+				-0.7
1,726,314	+				+1.7
1,726,317	+				-3.1
1,726,353	+				+1.6
1,726,388	+				+0.5
1,726,388	+				+3.0
1,726,388	+				-0.5
1,726,414	+				+0.5
1,726,414	+				-1.3
1,726,414	+				-0.9
1,726,415	-				+1.0
1,726,415	-				+0.2
1,726,415	-				+0.5
1,726,415	-				-0.5
1,726,417	-				-0.5
1,726,417	-				-1.4
1,726,417	-				-3.6
1,726,431	+				-2.3
1,726,431	+				-2.8
1,726,431	+				+1.5
1,726,431	+				+0.4
1,726,431	+				-0.2
1,726,431	+				+3.4
1,726,431	+				-1.9
1,726,432	-				+1.3
1,726,432	-				+0.7
1,726,432	-				-1.9
1,726,432	-				-1.0
1,726,432	-				+0.6
1,726,432	-				-1.8
1,726,452	+	mokC	NIAGMN_08890	0.17	-2.0
1,726,452	+	mokC	NIAGMN_08890	0.17	-0.1
1,726,452	+	mokC	NIAGMN_08890	0.17	+2.2
1,726,453	-	mokC	NIAGMN_08890	0.17	-3.3
1,726,485	+	mokC	NIAGMN_08890	0.32	-1.0
1,726,485	+	mokC	NIAGMN_08890	0.32	-0.5
1,726,485	+	mokC	NIAGMN_08890	0.32	+0.6
1,726,485	+	mokC	NIAGMN_08890	0.32	-2.4
1,726,486	-	mokC	NIAGMN_08890	0.33	+1.9
1,726,486	-	mokC	NIAGMN_08890	0.33	-0.7
1,726,486	-	mokC	NIAGMN_08890	0.33	+0.4
1,726,518	+	mokC	NIAGMN_08890	0.48	-1.6
1,726,519	-	mokC	NIAGMN_08890	0.49	+0.3
1,726,613	-				+0.1
1,726,624	+				+1.7
1,726,625	-				+0.4
1,726,672	+				-3.1
1,726,869	-	dnaJ	NIAGMN_08895	0.12	+0.8