Strain Fitness in Escherichia coli ECRC102 around NIAGMN_06425

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
1,225,067	+	cyoB	NIAGMN_06420	0.52	-1.9
1,225,067	+	cyoB	NIAGMN_06420	0.52	-1.0
1,225,067	+	cyoB	NIAGMN_06420	0.52	-1.3
1,225,067	+	cyoB	NIAGMN_06420	0.52	+0.9
1,225,147	+	cyoB	NIAGMN_06420	0.56	-1.7
1,225,147	+	cyoB	NIAGMN_06420	0.56	-0.8
1,225,147	+	cyoB	NIAGMN_06420	0.56	-4.8
1,225,147	+	cyoB	NIAGMN_06420	0.56	-0.4
1,225,147	+	cyoB	NIAGMN_06420	0.56	-2.8
1,225,147	+	cyoB	NIAGMN_06420	0.56	-2.8
1,225,147	+	cyoB	NIAGMN_06420	0.56	-0.7
1,225,148	-	cyoB	NIAGMN_06420	0.56	-1.2
1,225,148	-	cyoB	NIAGMN_06420	0.56	-1.3
1,225,148	-	cyoB	NIAGMN_06420	0.56	-1.9
1,225,198	-	cyoB	NIAGMN_06420	0.58	-0.3
1,225,265	+	cyoB	NIAGMN_06420	0.62	-3.5
1,225,265	+	cyoB	NIAGMN_06420	0.62	-2.8
1,225,265	+	cyoB	NIAGMN_06420	0.62	-3.1
1,225,269	+	cyoB	NIAGMN_06420	0.62	-3.5
1,225,348	+	cyoB	NIAGMN_06420	0.66	-1.2
1,225,348	+	cyoB	NIAGMN_06420	0.66	-2.8
1,225,349	-	cyoB	NIAGMN_06420	0.66	-1.9
1,225,349	-	cyoB	NIAGMN_06420	0.66	-0.8
1,225,359	+	cyoB	NIAGMN_06420	0.66	-3.9
1,225,359	+	cyoB	NIAGMN_06420	0.66	-0.5
1,225,360	-	cyoB	NIAGMN_06420	0.66	-2.8
1,225,440	+	cyoB	NIAGMN_06420	0.70	-2.5
1,225,440	+	cyoB	NIAGMN_06420	0.70	-2.0
1,225,450	+	cyoB	NIAGMN_06420	0.71	-3.5
1,225,451	-	cyoB	NIAGMN_06420	0.71	-3.6
1,225,544	+	cyoB	NIAGMN_06420	0.76	-1.7
1,225,557	-	cyoB	NIAGMN_06420	0.76	-1.3
1,225,560	+	cyoB	NIAGMN_06420	0.76	-1.7
1,225,585	+	cyoB	NIAGMN_06420	0.78	-1.4
1,225,585	+	cyoB	NIAGMN_06420	0.78	+2.1
1,225,585	+	cyoB	NIAGMN_06420	0.78	+0.2
1,225,586	-	cyoB	NIAGMN_06420	0.78	-0.6
1,225,586	-	cyoB	NIAGMN_06420	0.78	+0.5
1,225,586	-	cyoB	NIAGMN_06420	0.78	-0.8
1,225,594	-	cyoB	NIAGMN_06420	0.78	-2.1
1,225,756	+	cyoB	NIAGMN_06420	0.86	-1.7
1,225,756	+	cyoB	NIAGMN_06420	0.86	-0.9
1,225,775	-	cyoB	NIAGMN_06420	0.87	-2.3
1,225,789	-	cyoB	NIAGMN_06420	0.88	-2.0
1,225,812	+	cyoB	NIAGMN_06420	0.89	-1.5
1,225,812	+	cyoB	NIAGMN_06420	0.89	-2.6
1,225,812	+	cyoB	NIAGMN_06420	0.89	-1.0
1,225,863	+				-3.4
1,225,863	+				-3.8
1,225,942	+				-1.6
1,225,943	-				-2.0
1,225,945	+				-1.4
1,225,945	+				-3.1
1,225,946	-				-1.5
1,225,946	-				-2.5
1,225,946	-				-0.3
1,225,946	-				-0.3
1,225,946	-				-3.0
1,225,998	+				-2.2
1,225,998	+				+0.2
1,225,999	-				-0.6
1,225,999	-				-2.8
1,226,001	+				-0.9
1,226,002	-				-1.8
1,226,111	+	cyoC	NIAGMN_06425	0.15	-1.8
1,226,111	+	cyoC	NIAGMN_06425	0.15	-2.4
1,226,140	+	cyoC	NIAGMN_06425	0.20	-1.6
1,226,153	-	cyoC	NIAGMN_06425	0.22	-3.0
1,226,157	-	cyoC	NIAGMN_06425	0.23	+0.8
1,226,157	-	cyoC	NIAGMN_06425	0.23	-3.6
1,226,157	-	cyoC	NIAGMN_06425	0.23	-2.4
1,226,197	+	cyoC	NIAGMN_06425	0.29	-0.6
1,226,198	-	cyoC	NIAGMN_06425	0.29	-3.4
1,226,198	-	cyoC	NIAGMN_06425	0.29	-1.2
1,226,198	-	cyoC	NIAGMN_06425	0.29	+1.2
1,226,289	-	cyoC	NIAGMN_06425	0.44	-0.8
1,226,312	-	cyoC	NIAGMN_06425	0.48	-0.9
1,226,312	-	cyoC	NIAGMN_06425	0.48	-1.9
1,226,370	-	cyoC	NIAGMN_06425	0.57	-2.1
1,226,479	+	cyoC	NIAGMN_06425	0.75	-0.8
1,226,502	+	cyoC	NIAGMN_06425	0.79	-3.3
1,226,612	+				-2.4
1,226,612	+				+1.5
1,226,613	-				-1.2
1,226,613	-				-4.2
1,226,630	+				-2.8
1,226,630	+				-2.1
1,226,630	+				-1.1
1,226,630	+				-2.8
1,226,630	+				-3.5
1,226,631	-				-1.7
1,226,631	-				-3.6
1,226,676	-	cyoD	NIAGMN_06430	0.13	-2.5
1,226,676	-	cyoD	NIAGMN_06430	0.13	+0.4
1,226,798	+	cyoD	NIAGMN_06430	0.50	-2.0
1,226,798	+	cyoD	NIAGMN_06430	0.50	-0.3
1,226,888	+	cyoD	NIAGMN_06430	0.78	-3.9
1,226,888	+	cyoD	NIAGMN_06430	0.78	-0.1
1,226,888	+	cyoD	NIAGMN_06430	0.78	-3.0
1,226,903	+	cyoD	NIAGMN_06430	0.82	-2.9
1,226,903	+	cyoD	NIAGMN_06430	0.82	-1.2
1,226,903	+	cyoD	NIAGMN_06430	0.82	-1.6
1,226,903	+	cyoD	NIAGMN_06430	0.82	-3.8
1,226,903	+	cyoD	NIAGMN_06430	0.82	-3.0
1,226,903	+	cyoD	NIAGMN_06430	0.82	-0.8
1,226,909	+	cyoD	NIAGMN_06430	0.84	+0.3
1,226,909	+	cyoD	NIAGMN_06430	0.84	-2.6
1,226,925	+	cyoD	NIAGMN_06430	0.89	-0.6
1,226,926	-	cyoD	NIAGMN_06430	0.89	-3.9
1,226,926	-	cyoD	NIAGMN_06430	0.89	-2.6
1,226,941	+				-1.9
1,226,942	-				+0.1
1,226,942	-				-0.6
1,226,942	-				-0.4
1,226,959	+				+0.5
1,226,981	+				-0.6
1,226,981	+				+0.4
1,226,982	-				-5.7
1,226,982	-				-0.1
1,226,988	+				-1.6
1,226,989	-				-4.2
1,226,998	+				-0.8
1,227,089	+	cyoE	NIAGMN_06435	0.13	-0.1
1,227,090	-	cyoE	NIAGMN_06435	0.13	-0.1
1,227,090	-	cyoE	NIAGMN_06435	0.13	-0.2
1,227,090	-	cyoE	NIAGMN_06435	0.13	-1.4
1,227,093	+	cyoE	NIAGMN_06435	0.13	+0.3
1,227,094	-	cyoE	NIAGMN_06435	0.14	-3.0
1,227,094	-	cyoE	NIAGMN_06435	0.14	-1.6
1,227,094	-	cyoE	NIAGMN_06435	0.14	-0.5
1,227,147	+	cyoE	NIAGMN_06435	0.20	-1.4
1,227,147	+	cyoE	NIAGMN_06435	0.20	-1.3
1,227,147	+	cyoE	NIAGMN_06435	0.20	-2.1
1,227,148	-	cyoE	NIAGMN_06435	0.20	-3.9
1,227,148	-	cyoE	NIAGMN_06435	0.20	-1.4
1,227,237	+	cyoE	NIAGMN_06435	0.30	-1.0
1,227,238	-	cyoE	NIAGMN_06435	0.30	-1.7
1,227,238	-	cyoE	NIAGMN_06435	0.30	-1.5
1,227,238	-	cyoE	NIAGMN_06435	0.30	+1.2
1,227,238	-	cyoE	NIAGMN_06435	0.30	-0.9
1,227,266	+	cyoE	NIAGMN_06435	0.33	-1.5
1,227,331	-	cyoE	NIAGMN_06435	0.40	+1.6
1,227,342	+	cyoE	NIAGMN_06435	0.41	-0.6
1,227,343	-	cyoE	NIAGMN_06435	0.42	-1.3
1,227,344	+	cyoE	NIAGMN_06435	0.42	+0.9
1,227,351	+	cyoE	NIAGMN_06435	0.42	-3.5
1,227,351	+	cyoE	NIAGMN_06435	0.42	-3.5
1,227,351	+	cyoE	NIAGMN_06435	0.42	-4.1
1,227,351	+	cyoE	NIAGMN_06435	0.42	-2.0
1,227,351	+	cyoE	NIAGMN_06435	0.42	-3.6
1,227,352	-	cyoE	NIAGMN_06435	0.43	-3.2
1,227,352	-	cyoE	NIAGMN_06435	0.43	-0.9
1,227,352	-	cyoE	NIAGMN_06435	0.43	-2.7
1,227,424	-	cyoE	NIAGMN_06435	0.51	-1.8
1,227,474	-	cyoE	NIAGMN_06435	0.56	-2.5
1,227,504	+	cyoE	NIAGMN_06435	0.60	-2.8
1,227,504	+	cyoE	NIAGMN_06435	0.60	-3.1
1,227,505	-	cyoE	NIAGMN_06435	0.60	-2.6
1,227,528	-	cyoE	NIAGMN_06435	0.62	-1.2
1,227,534	+	cyoE	NIAGMN_06435	0.63	-3.8
1,227,534	+	cyoE	NIAGMN_06435	0.63	-0.7
1,227,568	+	cyoE	NIAGMN_06435	0.67	-4.0
1,227,606	+	cyoE	NIAGMN_06435	0.71	-2.6
1,227,606	+	cyoE	NIAGMN_06435	0.71	-3.0
1,227,606	+	cyoE	NIAGMN_06435	0.71	-0.1
1,227,607	-	cyoE	NIAGMN_06435	0.71	-2.7
1,227,607	-	cyoE	NIAGMN_06435	0.71	-1.0
1,227,607	-	cyoE	NIAGMN_06435	0.71	-2.4
1,227,607	-	cyoE	NIAGMN_06435	0.71	-0.7
1,227,607	-	cyoE	NIAGMN_06435	0.71	+1.9
1,227,608	+	cyoE	NIAGMN_06435	0.71	-1.9
1,227,608	+	cyoE	NIAGMN_06435	0.71	-2.2
1,227,609	-	cyoE	NIAGMN_06435	0.71	-0.7