Strain Fitness in Escherichia coli ECRC102 around NIAGMN_05795

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrhsA and NIAGMN_05795 are separated by 26 nucleotidesNIAGMN_05795 and tnp-ISAs1 are separated by 214 nucleotides NIAGMN_05790: rhsA - type IV secretion protein Rhs, at 1,073,506 to 1,074,840 rhsA NIAGMN_05795: NIAGMN_05795 - Immunity protein of metallopeptidase 4 toxin, at 1,074,867 to 1,075,088 _05795 NIAGMN_05800: tnp-ISAs1 - ISAs1 family transposase, at 1,075,303 to 1,076,439 tnp-ISAs1 Position (kb) 1074 1075 1076Strain fitness (log2 ratio) -2 -1 0 1 2at 1073.896 kb on - strand, within rhsAat 1073.932 kb on + strand, within rhsAat 1073.932 kb on + strand, within rhsAat 1073.932 kb on + strand, within rhsAat 1073.933 kb on - strand, within rhsAat 1074.218 kb on - strand, within rhsAat 1074.296 kb on - strand, within rhsAat 1074.296 kb on - strand, within rhsAat 1074.296 kb on - strand, within rhsAat 1074.296 kb on - strand, within rhsAat 1074.340 kb on + strand, within rhsAat 1074.421 kb on + strand, within rhsAat 1074.421 kb on + strand, within rhsAat 1074.421 kb on + strand, within rhsAat 1074.423 kb on + strand, within rhsAat 1074.424 kb on - strand, within rhsAat 1074.424 kb on - strand, within rhsAat 1074.508 kb on - strand, within rhsAat 1075.651 kb on + strand, within tnp-ISAs1

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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1,073,896 - rhsA NIAGMN_05790 0.29 +1.4
1,073,932 + rhsA NIAGMN_05790 0.32 +0.4
1,073,932 + rhsA NIAGMN_05790 0.32 +0.7
1,073,932 + rhsA NIAGMN_05790 0.32 +1.0
1,073,933 - rhsA NIAGMN_05790 0.32 +2.3
1,074,218 - rhsA NIAGMN_05790 0.53 -1.0
1,074,296 - rhsA NIAGMN_05790 0.59 -1.3
1,074,296 - rhsA NIAGMN_05790 0.59 +2.0
1,074,296 - rhsA NIAGMN_05790 0.59 -1.4
1,074,296 - rhsA NIAGMN_05790 0.59 -1.3
1,074,340 + rhsA NIAGMN_05790 0.62 +0.0
1,074,421 + rhsA NIAGMN_05790 0.69 +1.6
1,074,421 + rhsA NIAGMN_05790 0.69 -1.8
1,074,421 + rhsA NIAGMN_05790 0.69 +0.4
1,074,423 + rhsA NIAGMN_05790 0.69 -1.2
1,074,424 - rhsA NIAGMN_05790 0.69 +2.4
1,074,424 - rhsA NIAGMN_05790 0.69 -1.5
1,074,508 - rhsA NIAGMN_05790 0.75 -1.1
1,075,651 + tnp-ISAs1 NIAGMN_05800 0.31 -0.8

Or see this region's nucleotide sequence