Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_05020 and NIAGMN_05025 are separated by 138 nucleotides NIAGMN_05025 and fimC are separated by 14 nucleotides fimC and NIAGMN_05035 overlap by 4 nucleotides
NIAGMN_05020: NIAGMN_05020 - Fimbrial biogenesis outer membrane usher protein, at 912,222 to 914,384
_05020
NIAGMN_05025: NIAGMN_05025 - Outer membrane protein, at 914,523 to 914,672
_05025
NIAGMN_05030: fimC - molecular chaperone, at 914,687 to 915,418
fimC
NIAGMN_05035: NIAGMN_05035 - Fimbrial protein, at 915,415 to 916,476
_05035
Position (kb) 914
915
916 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 913.697 kb on + strand, within NIAGMN_05020 at 913.934 kb on + strand, within NIAGMN_05020 at 913.935 kb on - strand, within NIAGMN_05020 at 913.937 kb on + strand, within NIAGMN_05020 at 914.005 kb on + strand, within NIAGMN_05020 at 914.095 kb on - strand, within NIAGMN_05020 at 914.095 kb on - strand, within NIAGMN_05020 at 914.274 kb on - strand at 914.284 kb on + strand at 914.301 kb on + strand at 914.301 kb on + strand at 914.779 kb on + strand, within fimC at 914.783 kb on - strand, within fimC at 915.003 kb on - strand, within fimC at 915.005 kb on + strand, within fimC at 915.006 kb on - strand, within fimC at 915.085 kb on + strand, within fimC at 915.086 kb on - strand, within fimC at 915.086 kb on - strand, within fimC at 915.090 kb on + strand, within fimC at 915.147 kb on + strand, within fimC at 915.148 kb on - strand, within fimC at 915.167 kb on - strand, within fimC at 915.201 kb on - strand, within fimC at 915.201 kb on - strand, within fimC at 915.201 kb on - strand, within fimC at 915.201 kb on - strand, within fimC at 915.201 kb on - strand, within fimC at 915.253 kb on + strand, within fimC at 915.254 kb on - strand, within fimC at 915.306 kb on - strand, within fimC at 915.332 kb on + strand, within fimC at 915.535 kb on - strand, within NIAGMN_05035 at 915.535 kb on - strand, within NIAGMN_05035 at 915.718 kb on + strand, within NIAGMN_05035 at 915.719 kb on - strand, within NIAGMN_05035 at 915.734 kb on - strand, within NIAGMN_05035 at 915.786 kb on + strand, within NIAGMN_05035 at 915.799 kb on - strand, within NIAGMN_05035 at 915.799 kb on - strand, within NIAGMN_05035 at 915.840 kb on + strand, within NIAGMN_05035 at 915.868 kb on - strand, within NIAGMN_05035 at 916.231 kb on + strand, within NIAGMN_05035 at 916.322 kb on - strand, within NIAGMN_05035 at 916.337 kb on - strand, within NIAGMN_05035 at 916.345 kb on + strand, within NIAGMN_05035 at 916.345 kb on + strand, within NIAGMN_05035 at 916.375 kb on + strand at 916.387 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 913,697 + NIAGMN_05020 0.68 +0.6 913,934 + NIAGMN_05020 0.79 -2.0 913,935 - NIAGMN_05020 0.79 -1.1 913,937 + NIAGMN_05020 0.79 +3.0 914,005 + NIAGMN_05020 0.82 +3.0 914,095 - NIAGMN_05020 0.87 +2.8 914,095 - NIAGMN_05020 0.87 -2.9 914,274 - +0.5 914,284 + +1.6 914,301 + +0.1 914,301 + +2.7 914,779 + fimC NIAGMN_05030 0.13 +1.1 914,783 - fimC NIAGMN_05030 0.13 -2.7 915,003 - fimC NIAGMN_05030 0.43 -2.7 915,005 + fimC NIAGMN_05030 0.43 -0.6 915,006 - fimC NIAGMN_05030 0.44 +0.9 915,085 + fimC NIAGMN_05030 0.54 +0.5 915,086 - fimC NIAGMN_05030 0.55 +1.1 915,086 - fimC NIAGMN_05030 0.55 -0.7 915,090 + fimC NIAGMN_05030 0.55 -0.6 915,147 + fimC NIAGMN_05030 0.63 +1.2 915,148 - fimC NIAGMN_05030 0.63 -2.1 915,167 - fimC NIAGMN_05030 0.66 -1.5 915,201 - fimC NIAGMN_05030 0.70 -2.5 915,201 - fimC NIAGMN_05030 0.70 +2.0 915,201 - fimC NIAGMN_05030 0.70 +1.3 915,201 - fimC NIAGMN_05030 0.70 -0.3 915,201 - fimC NIAGMN_05030 0.70 +0.5 915,253 + fimC NIAGMN_05030 0.77 +0.7 915,254 - fimC NIAGMN_05030 0.77 -0.2 915,306 - fimC NIAGMN_05030 0.85 +3.0 915,332 + fimC NIAGMN_05030 0.88 -1.3 915,535 - NIAGMN_05035 0.11 +0.6 915,535 - NIAGMN_05035 0.11 +0.3 915,718 + NIAGMN_05035 0.29 -1.4 915,719 - NIAGMN_05035 0.29 -1.3 915,734 - NIAGMN_05035 0.30 -0.6 915,786 + NIAGMN_05035 0.35 -1.1 915,799 - NIAGMN_05035 0.36 +0.7 915,799 - NIAGMN_05035 0.36 +0.6 915,840 + NIAGMN_05035 0.40 -1.2 915,868 - NIAGMN_05035 0.43 -0.1 916,231 + NIAGMN_05035 0.77 -0.8 916,322 - NIAGMN_05035 0.85 -0.7 916,337 - NIAGMN_05035 0.87 -1.5 916,345 + NIAGMN_05035 0.88 +0.8 916,345 + NIAGMN_05035 0.88 +1.4 916,375 + +1.1 916,387 + -2.2
Or see this region's nucleotide sequence