Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pgl and ybhA are separated by 154 nucleotides ybhA and modC are separated by 0 nucleotides modC and modC are separated by 2 nucleotides modC and modA overlap by 1 nucleotides
NIAGMN_04725: pgl - 6-phosphogluconolactonase, at 857,586 to 858,581
pgl
NIAGMN_04730: ybhA - bifunctional pyridoxal phosphate/fructose-1,6-bisphosphate phosphatase, at 858,736 to 859,554
ybhA
NIAGMN_04735: modC - molybdenum ABC transporter ATP-binding protein ModC, at 859,555 to 860,613
modC
NIAGMN_04740: modC - molybdenum ABC transporter ATP-binding protein ModC, at 860,616 to 861,305
modC
NIAGMN_04745: modA - molybdate ABC transporter substrate-binding protein, at 861,305 to 862,078
modA
Position (kb) 859
860
861 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 858.690 kb on - strand at 858.690 kb on - strand at 858.690 kb on - strand at 858.776 kb on + strand at 858.777 kb on - strand at 858.801 kb on - strand at 858.852 kb on - strand, within ybhA at 858.896 kb on - strand, within ybhA at 858.924 kb on + strand, within ybhA at 859.000 kb on - strand, within ybhA at 859.000 kb on - strand, within ybhA at 859.054 kb on + strand, within ybhA at 859.054 kb on + strand, within ybhA at 859.054 kb on + strand, within ybhA at 859.054 kb on + strand, within ybhA at 859.054 kb on + strand, within ybhA at 859.054 kb on + strand, within ybhA at 859.055 kb on - strand, within ybhA at 859.055 kb on - strand, within ybhA at 859.055 kb on - strand, within ybhA at 859.075 kb on + strand, within ybhA at 859.192 kb on - strand, within ybhA at 859.199 kb on + strand, within ybhA at 859.506 kb on + strand at 859.537 kb on + strand at 859.538 kb on - strand at 859.553 kb on - strand at 859.708 kb on - strand, within modC at 859.708 kb on - strand, within modC at 859.730 kb on - strand, within modC at 859.730 kb on - strand, within modC at 859.830 kb on + strand, within modC at 859.831 kb on - strand, within modC at 859.918 kb on - strand, within modC at 859.956 kb on + strand, within modC at 859.957 kb on - strand, within modC at 860.063 kb on + strand, within modC at 860.063 kb on + strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.106 kb on - strand, within modC at 860.429 kb on - strand, within modC at 860.530 kb on - strand at 860.566 kb on - strand at 860.697 kb on - strand, within modC at 860.697 kb on - strand, within modC at 860.749 kb on + strand, within modC at 860.750 kb on - strand, within modC at 860.750 kb on - strand, within modC at 860.750 kb on - strand, within modC at 860.750 kb on - strand, within modC at 860.750 kb on - strand, within modC at 860.750 kb on - strand, within modC at 860.750 kb on - strand, within modC at 860.850 kb on - strand, within modC at 861.051 kb on - strand, within modC at 861.065 kb on - strand, within modC at 861.065 kb on - strand, within modC at 861.065 kb on - strand, within modC at 861.065 kb on - strand, within modC at 861.106 kb on - strand, within modC at 861.109 kb on - strand, within modC at 861.112 kb on - strand, within modC at 861.112 kb on - strand, within modC at 861.148 kb on - strand, within modC at 861.148 kb on - strand, within modC at 861.148 kb on - strand, within modC at 861.202 kb on - strand, within modC at 861.234 kb on - strand, within modC at 861.271 kb on - strand at 861.307 kb on - strand at 861.307 kb on - strand at 861.307 kb on - strand at 861.307 kb on - strand at 861.307 kb on - strand at 861.317 kb on - strand at 861.364 kb on - strand at 861.370 kb on - strand at 861.395 kb on - strand, within modA at 861.395 kb on - strand, within modA at 861.479 kb on - strand, within modA at 861.479 kb on - strand, within modA at 861.499 kb on - strand, within modA
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 858,690 - +1.0 858,690 - +2.2 858,690 - -1.1 858,776 + -1.1 858,777 - +2.0 858,801 - -0.2 858,852 - ybhA NIAGMN_04730 0.14 +1.1 858,896 - ybhA NIAGMN_04730 0.20 -2.3 858,924 + ybhA NIAGMN_04730 0.23 +1.5 859,000 - ybhA NIAGMN_04730 0.32 -0.2 859,000 - ybhA NIAGMN_04730 0.32 -0.2 859,054 + ybhA NIAGMN_04730 0.39 -2.3 859,054 + ybhA NIAGMN_04730 0.39 -1.1 859,054 + ybhA NIAGMN_04730 0.39 -1.6 859,054 + ybhA NIAGMN_04730 0.39 +0.2 859,054 + ybhA NIAGMN_04730 0.39 -2.0 859,054 + ybhA NIAGMN_04730 0.39 -0.4 859,055 - ybhA NIAGMN_04730 0.39 +0.9 859,055 - ybhA NIAGMN_04730 0.39 -1.1 859,055 - ybhA NIAGMN_04730 0.39 -0.6 859,075 + ybhA NIAGMN_04730 0.41 -0.1 859,192 - ybhA NIAGMN_04730 0.56 -0.3 859,199 + ybhA NIAGMN_04730 0.57 -0.2 859,506 + +2.6 859,537 + +2.5 859,538 - -2.3 859,553 - -1.4 859,708 - modC NIAGMN_04735 0.14 -0.5 859,708 - modC NIAGMN_04735 0.14 +1.1 859,730 - modC NIAGMN_04735 0.17 +1.5 859,730 - modC NIAGMN_04735 0.17 -1.4 859,830 + modC NIAGMN_04735 0.26 -0.4 859,831 - modC NIAGMN_04735 0.26 +0.8 859,918 - modC NIAGMN_04735 0.34 -1.5 859,956 + modC NIAGMN_04735 0.38 -0.2 859,957 - modC NIAGMN_04735 0.38 -1.6 860,063 + modC NIAGMN_04735 0.48 -0.3 860,063 + modC NIAGMN_04735 0.48 -0.1 860,064 - modC NIAGMN_04735 0.48 +0.9 860,064 - modC NIAGMN_04735 0.48 +0.0 860,064 - modC NIAGMN_04735 0.48 +1.1 860,064 - modC NIAGMN_04735 0.48 -2.7 860,064 - modC NIAGMN_04735 0.48 -0.5 860,064 - modC NIAGMN_04735 0.48 -0.4 860,064 - modC NIAGMN_04735 0.48 -1.7 860,064 - modC NIAGMN_04735 0.48 -0.4 860,064 - modC NIAGMN_04735 0.48 -0.9 860,064 - modC NIAGMN_04735 0.48 -0.7 860,106 - modC NIAGMN_04735 0.52 -1.5 860,429 - modC NIAGMN_04735 0.83 -1.2 860,530 - -0.9 860,566 - +2.3 860,697 - modC NIAGMN_04740 0.12 +0.7 860,697 - modC NIAGMN_04740 0.12 -2.4 860,749 + modC NIAGMN_04740 0.19 -1.2 860,750 - modC NIAGMN_04740 0.19 -0.5 860,750 - modC NIAGMN_04740 0.19 +1.3 860,750 - modC NIAGMN_04740 0.19 -2.2 860,750 - modC NIAGMN_04740 0.19 +0.0 860,750 - modC NIAGMN_04740 0.19 +2.8 860,750 - modC NIAGMN_04740 0.19 -0.5 860,750 - modC NIAGMN_04740 0.19 +0.7 860,850 - modC NIAGMN_04740 0.34 -3.6 861,051 - modC NIAGMN_04740 0.63 +3.3 861,065 - modC NIAGMN_04740 0.65 +0.8 861,065 - modC NIAGMN_04740 0.65 +1.4 861,065 - modC NIAGMN_04740 0.65 +0.8 861,065 - modC NIAGMN_04740 0.65 -1.3 861,106 - modC NIAGMN_04740 0.71 +1.7 861,109 - modC NIAGMN_04740 0.71 -3.2 861,112 - modC NIAGMN_04740 0.72 +1.0 861,112 - modC NIAGMN_04740 0.72 +3.1 861,148 - modC NIAGMN_04740 0.77 +0.0 861,148 - modC NIAGMN_04740 0.77 +2.5 861,148 - modC NIAGMN_04740 0.77 +2.2 861,202 - modC NIAGMN_04740 0.85 -2.7 861,234 - modC NIAGMN_04740 0.90 +2.8 861,271 - +0.1 861,307 - -1.2 861,307 - +2.3 861,307 - +2.1 861,307 - -0.3 861,307 - -0.7 861,317 - -0.0 861,364 - -0.1 861,370 - -2.1 861,395 - modA NIAGMN_04745 0.12 -0.5 861,395 - modA NIAGMN_04745 0.12 +0.8 861,479 - modA NIAGMN_04745 0.22 -1.7 861,479 - modA NIAGMN_04745 0.22 -3.0 861,499 - modA NIAGMN_04745 0.25 -1.2
Or see this region's nucleotide sequence