Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_04595 and NIAGMN_04600 overlap by 13 nucleotides NIAGMN_04600 and rrrD overlap by 4 nucleotides rrrD and NIAGMN_04610 overlap by 1 nucleotides NIAGMN_04610 and NIAGMN_04615 are separated by 621 nucleotides NIAGMN_04615 and NIAGMN_04620 are separated by 99 nucleotides NIAGMN_04620 and NIAGMN_04625 overlap by 62 nucleotides
NIAGMN_04595: NIAGMN_04595 - Putative bacteriophage protein (Gene 65), at 837,918 to 838,070
_04595
NIAGMN_04600: NIAGMN_04600 - lysis protein, at 838,058 to 838,525
_04600
NIAGMN_04605: rrrD - lysozyme RrrD, at 838,522 to 839,019
rrrD
NIAGMN_04610: NIAGMN_04610 - holin, at 839,019 to 839,234
_04610
NIAGMN_04615: NIAGMN_04615 - DUF3927 domain-containing protein, at 839,856 to 839,936
_04615
NIAGMN_04620: NIAGMN_04620 - hypothetical protein, at 840,036 to 840,161
_04620
NIAGMN_04625: NIAGMN_04625 - Membrane protein, at 840,100 to 840,843
_04625
Position (kb) 839
840 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 838.050 kb on + strand, within NIAGMN_04595 at 838.056 kb on + strand at 838.084 kb on - strand at 838.323 kb on + strand, within NIAGMN_04600 at 838.427 kb on - strand, within NIAGMN_04600 at 838.504 kb on + strand at 838.639 kb on - strand, within rrrD at 838.713 kb on - strand, within rrrD at 838.739 kb on - strand, within rrrD at 838.792 kb on - strand, within rrrD at 838.867 kb on + strand, within rrrD at 838.868 kb on - strand, within rrrD at 838.901 kb on - strand, within rrrD at 839.045 kb on + strand, within NIAGMN_04610 at 839.284 kb on + strand at 839.285 kb on - strand at 839.317 kb on - strand at 839.317 kb on - strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.355 kb on + strand at 839.381 kb on + strand at 839.381 kb on + strand at 839.385 kb on + strand at 839.385 kb on + strand at 839.385 kb on + strand at 839.479 kb on - strand at 839.513 kb on - strand at 839.536 kb on - strand at 839.707 kb on - strand at 839.714 kb on + strand at 839.715 kb on - strand at 839.764 kb on - strand at 840.050 kb on - strand, within NIAGMN_04620 at 840.050 kb on - strand, within NIAGMN_04620
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 838,050 + NIAGMN_04595 0.86 +0.5 838,056 + -0.0 838,084 - -0.5 838,323 + NIAGMN_04600 0.57 -2.2 838,427 - NIAGMN_04600 0.79 +2.3 838,504 + -1.3 838,639 - rrrD NIAGMN_04605 0.23 -0.6 838,713 - rrrD NIAGMN_04605 0.38 +2.8 838,739 - rrrD NIAGMN_04605 0.44 +0.3 838,792 - rrrD NIAGMN_04605 0.54 +1.2 838,867 + rrrD NIAGMN_04605 0.69 +0.0 838,868 - rrrD NIAGMN_04605 0.69 -0.4 838,901 - rrrD NIAGMN_04605 0.76 -3.1 839,045 + NIAGMN_04610 0.12 -0.4 839,284 + -1.0 839,285 - +1.4 839,317 - -2.9 839,317 - +1.2 839,319 + -0.1 839,319 + -0.8 839,355 + +3.0 839,381 + +0.3 839,381 + +0.6 839,385 + +2.3 839,385 + +2.6 839,385 + -0.2 839,479 - -1.9 839,513 - +0.9 839,536 - -2.0 839,707 - -0.9 839,714 + +0.0 839,715 - -0.8 839,764 - +0.8 840,050 - NIAGMN_04620 0.11 +0.3 840,050 - NIAGMN_04620 0.11 -1.2
Or see this region's nucleotide sequence