Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybiR and mntR overlap by 4 nucleotides mntR and mntS are separated by 185 nucleotides mntS and opgE are separated by 271 nucleotides
NIAGMN_04215: ybiR - Inner membrane protein YbiR, at 761,969 to 763,087
ybiR
NIAGMN_04220: mntR - manganese-binding transcriptional regulator MntR, at 763,084 to 763,551
mntR
NIAGMN_04225: mntS - manganase accumulation protein MntS, at 763,737 to 763,865
mntS
NIAGMN_04230: opgE - phosphoethanolamine transferase, at 764,137 to 765,720
opgE
Position (kb) 763
764 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 762.761 kb on - strand, within ybiR at 762.779 kb on - strand, within ybiR at 762.945 kb on - strand, within ybiR at 763.021 kb on + strand at 763.038 kb on - strand at 763.312 kb on - strand, within mntR at 763.431 kb on - strand, within mntR at 763.431 kb on - strand, within mntR at 763.431 kb on - strand, within mntR at 763.505 kb on - strand at 763.577 kb on + strand at 763.578 kb on - strand at 763.578 kb on - strand at 763.578 kb on - strand at 763.578 kb on - strand at 763.578 kb on - strand at 763.578 kb on - strand at 763.578 kb on - strand at 763.578 kb on - strand at 763.581 kb on + strand at 763.582 kb on - strand at 763.582 kb on - strand at 763.582 kb on - strand at 763.651 kb on + strand at 763.657 kb on + strand at 763.659 kb on + strand at 763.660 kb on - strand at 763.664 kb on + strand at 763.664 kb on + strand at 763.676 kb on + strand at 763.676 kb on + strand at 763.676 kb on + strand at 763.682 kb on + strand at 763.682 kb on + strand at 763.682 kb on + strand at 763.686 kb on + strand at 763.686 kb on + strand at 763.686 kb on + strand at 763.718 kb on + strand at 763.737 kb on - strand at 763.737 kb on - strand at 763.757 kb on + strand, within mntS at 763.789 kb on + strand, within mntS at 763.808 kb on + strand, within mntS at 763.808 kb on + strand, within mntS at 763.983 kb on + strand at 764.144 kb on + strand at 764.222 kb on + strand at 764.237 kb on + strand at 764.473 kb on + strand, within opgE at 764.633 kb on + strand, within opgE at 764.791 kb on + strand, within opgE at 764.791 kb on + strand, within opgE
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 762,761 - ybiR NIAGMN_04215 0.71 -0.4 762,779 - ybiR NIAGMN_04215 0.72 +0.6 762,945 - ybiR NIAGMN_04215 0.87 +1.7 763,021 + +0.4 763,038 - +0.2 763,312 - mntR NIAGMN_04220 0.49 -0.8 763,431 - mntR NIAGMN_04220 0.74 +1.9 763,431 - mntR NIAGMN_04220 0.74 -2.0 763,431 - mntR NIAGMN_04220 0.74 +0.8 763,505 - +0.1 763,577 + +0.2 763,578 - -0.3 763,578 - +0.9 763,578 - -0.9 763,578 - -3.2 763,578 - -1.7 763,578 - -0.4 763,578 - +3.7 763,578 - -0.7 763,581 + +0.3 763,582 - -0.7 763,582 - +1.1 763,582 - -1.5 763,651 + +0.5 763,657 + +2.2 763,659 + +1.9 763,660 - +2.2 763,664 + -1.2 763,664 + +4.2 763,676 + -1.3 763,676 + -0.6 763,676 + +1.0 763,682 + +1.3 763,682 + -3.5 763,682 + -1.8 763,686 + -1.1 763,686 + -0.0 763,686 + +0.5 763,718 + +0.9 763,737 - +1.7 763,737 - +0.3 763,757 + mntS NIAGMN_04225 0.16 -0.5 763,789 + mntS NIAGMN_04225 0.40 -1.4 763,808 + mntS NIAGMN_04225 0.55 +2.3 763,808 + mntS NIAGMN_04225 0.55 -2.9 763,983 + +1.7 764,144 + -1.2 764,222 + +2.4 764,237 + -0.1 764,473 + opgE NIAGMN_04230 0.21 +3.3 764,633 + opgE NIAGMN_04230 0.31 -0.8 764,791 + opgE NIAGMN_04230 0.41 -1.5 764,791 + opgE NIAGMN_04230 0.41 -1.5
Or see this region's nucleotide sequence