Strain Fitness in Escherichia coli ECRC102 around NIAGMN_04065

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybjJ and ybjI overlap by 1 nucleotidesybjI and ybjH are separated by 91 nucleotidesybjH and mdfA are separated by 40 nucleotides NIAGMN_04055: ybjJ - Inner membrane protein YbjJ, at 728,414 to 729,622 ybjJ NIAGMN_04060: ybjI - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, at 729,622 to 730,437 ybjI NIAGMN_04065: ybjH - Uncharacterized protein YbjH, at 730,529 to 730,807 ybjH NIAGMN_04070: mdfA - multidrug efflux MFS transporter MdfA, at 730,848 to 732,080 mdfA Position (kb) 730 731Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 729.617 kb on - strandat 729.665 kb on + strandat 729.891 kb on + strand, within ybjIat 730.009 kb on + strand, within ybjIat 730.010 kb on - strand, within ybjIat 730.046 kb on + strand, within ybjIat 730.137 kb on + strand, within ybjIat 730.137 kb on + strand, within ybjIat 730.235 kb on + strand, within ybjIat 730.236 kb on - strand, within ybjIat 730.278 kb on + strand, within ybjIat 730.483 kb on + strandat 730.542 kb on + strandat 730.542 kb on + strandat 730.737 kb on - strand, within ybjHat 730.758 kb on + strand, within ybjHat 730.759 kb on - strand, within ybjHat 730.759 kb on - strand, within ybjHat 730.805 kb on + strandat 730.878 kb on - strandat 731.114 kb on - strand, within mdfAat 731.117 kb on + strand, within mdfAat 731.196 kb on - strand, within mdfAat 731.444 kb on + strand, within mdfAat 731.445 kb on - strand, within mdfAat 731.447 kb on - strand, within mdfAat 731.447 kb on - strand, within mdfAat 731.447 kb on - strand, within mdfAat 731.447 kb on - strand, within mdfAat 731.702 kb on - strand, within mdfAat 731.782 kb on - strand, within mdfAat 731.782 kb on - strand, within mdfAat 731.784 kb on + strand, within mdfA

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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729,617 - +0.4
729,665 + -0.6
729,891 + ybjI NIAGMN_04060 0.33 +0.3
730,009 + ybjI NIAGMN_04060 0.47 +2.0
730,010 - ybjI NIAGMN_04060 0.48 +2.0
730,046 + ybjI NIAGMN_04060 0.52 -2.8
730,137 + ybjI NIAGMN_04060 0.63 +0.6
730,137 + ybjI NIAGMN_04060 0.63 +2.6
730,235 + ybjI NIAGMN_04060 0.75 -0.1
730,236 - ybjI NIAGMN_04060 0.75 -2.3
730,278 + ybjI NIAGMN_04060 0.80 +0.1
730,483 + -2.5
730,542 + +1.0
730,542 + -0.1
730,737 - ybjH NIAGMN_04065 0.75 +0.5
730,758 + ybjH NIAGMN_04065 0.82 -1.7
730,759 - ybjH NIAGMN_04065 0.82 +1.0
730,759 - ybjH NIAGMN_04065 0.82 -1.0
730,805 + -0.1
730,878 - -0.3
731,114 - mdfA NIAGMN_04070 0.22 +1.2
731,117 + mdfA NIAGMN_04070 0.22 -2.6
731,196 - mdfA NIAGMN_04070 0.28 +2.3
731,444 + mdfA NIAGMN_04070 0.48 -0.4
731,445 - mdfA NIAGMN_04070 0.48 +0.9
731,447 - mdfA NIAGMN_04070 0.49 +0.0
731,447 - mdfA NIAGMN_04070 0.49 -1.1
731,447 - mdfA NIAGMN_04070 0.49 -1.0
731,447 - mdfA NIAGMN_04070 0.49 -2.5
731,702 - mdfA NIAGMN_04070 0.69 +1.1
731,782 - mdfA NIAGMN_04070 0.76 -1.7
731,782 - mdfA NIAGMN_04070 0.76 -1.7
731,784 + mdfA NIAGMN_04070 0.76 -1.5

Or see this region's nucleotide sequence