Strain Fitness in Escherichia coli ECRC102 around NIAGMN_03995

Experiment: Casamino-acids

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntybjO and potI are separated by 59 nucleotidespotI and potH overlap by 4 nucleotidespotH and potG are separated by 9 nucleotides NIAGMN_03985: ybjO - Inner membrane protein YbjO, at 717,276 to 717,764 ybjO NIAGMN_03990: potI - putrescine ABC transporter permease PotI, at 717,824 to 718,669 potI NIAGMN_03995: potH - putrescine ABC transporter permease PotH, at 718,666 to 719,619 potH NIAGMN_04000: potG - putrescine ABC transporter ATP-binding subunit PotG, at 719,629 to 720,762 potG Position (kb) 718 719 720Strain fitness (log2 ratio) -2 -1 0 1 2at 717.793 kb on + strandat 717.793 kb on + strandat 717.793 kb on + strandat 717.794 kb on - strandat 717.794 kb on - strandat 717.794 kb on - strandat 717.935 kb on + strand, within potIat 717.936 kb on - strand, within potIat 718.246 kb on + strand, within potIat 718.506 kb on - strand, within potIat 718.577 kb on - strand, within potIat 718.799 kb on - strand, within potHat 718.799 kb on - strand, within potHat 718.897 kb on - strand, within potHat 718.897 kb on - strand, within potHat 719.008 kb on - strand, within potHat 719.036 kb on + strand, within potHat 719.043 kb on - strand, within potHat 719.056 kb on - strand, within potHat 719.074 kb on - strand, within potHat 719.210 kb on - strand, within potHat 719.210 kb on - strand, within potHat 719.220 kb on + strand, within potHat 719.325 kb on - strand, within potHat 719.377 kb on - strand, within potHat 719.433 kb on + strand, within potHat 719.458 kb on + strand, within potHat 719.508 kb on + strand, within potHat 719.511 kb on - strand, within potHat 719.630 kb on + strandat 719.769 kb on - strand, within potGat 719.800 kb on + strand, within potGat 719.824 kb on - strand, within potGat 719.824 kb on - strand, within potGat 719.879 kb on - strand, within potGat 720.051 kb on - strand, within potGat 720.097 kb on - strand, within potGat 720.253 kb on + strand, within potGat 720.254 kb on - strand, within potGat 720.254 kb on - strand, within potGat 720.400 kb on + strand, within potGat 720.400 kb on + strand, within potGat 720.480 kb on + strand, within potG

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
remove
717,793 + +0.9
717,793 + +1.4
717,793 + -1.1
717,794 - +1.9
717,794 - +0.6
717,794 - -0.3
717,935 + potI NIAGMN_03990 0.13 +1.4
717,936 - potI NIAGMN_03990 0.13 +0.9
718,246 + potI NIAGMN_03990 0.50 +1.1
718,506 - potI NIAGMN_03990 0.81 +1.3
718,577 - potI NIAGMN_03990 0.89 -0.6
718,799 - potH NIAGMN_03995 0.14 +0.5
718,799 - potH NIAGMN_03995 0.14 -2.3
718,897 - potH NIAGMN_03995 0.24 -1.2
718,897 - potH NIAGMN_03995 0.24 +0.5
719,008 - potH NIAGMN_03995 0.36 +0.4
719,036 + potH NIAGMN_03995 0.39 +0.6
719,043 - potH NIAGMN_03995 0.40 +0.6
719,056 - potH NIAGMN_03995 0.41 -0.1
719,074 - potH NIAGMN_03995 0.43 -0.6
719,210 - potH NIAGMN_03995 0.57 +2.6
719,210 - potH NIAGMN_03995 0.57 +0.4
719,220 + potH NIAGMN_03995 0.58 +1.7
719,325 - potH NIAGMN_03995 0.69 -0.6
719,377 - potH NIAGMN_03995 0.75 +0.5
719,433 + potH NIAGMN_03995 0.80 -1.5
719,458 + potH NIAGMN_03995 0.83 -0.9
719,508 + potH NIAGMN_03995 0.88 -0.9
719,511 - potH NIAGMN_03995 0.89 +1.6
719,630 + +0.2
719,769 - potG NIAGMN_04000 0.12 +1.9
719,800 + potG NIAGMN_04000 0.15 -1.0
719,824 - potG NIAGMN_04000 0.17 +0.9
719,824 - potG NIAGMN_04000 0.17 -1.3
719,879 - potG NIAGMN_04000 0.22 +1.9
720,051 - potG NIAGMN_04000 0.37 +0.1
720,097 - potG NIAGMN_04000 0.41 -0.1
720,253 + potG NIAGMN_04000 0.55 -2.0
720,254 - potG NIAGMN_04000 0.55 -1.5
720,254 - potG NIAGMN_04000 0.55 +0.9
720,400 + potG NIAGMN_04000 0.68 +1.5
720,400 + potG NIAGMN_04000 0.68 -2.7
720,480 + potG NIAGMN_04000 0.75 +0.5

Or see this region's nucleotide sequence