Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rarA and lolA are separated by 10 nucleotides lolA and ftsK are separated by 154 nucleotides ftsK and lrp are separated by 134 nucleotides
NIAGMN_03280: rarA - replication-associated recombination protein RarA, at 584,343 to 585,686
rarA
NIAGMN_03285: lolA - outer membrane lipoprotein chaperone LolA, at 585,697 to 586,308
lolA
NIAGMN_03290: ftsK - DNA translocase FtsK, at 586,463 to 590,491
ftsK
NIAGMN_03295: lrp - leucine-responsive transcriptional regulator Lrp, at 590,626 to 591,120
lrp
Position (kb) 586
587
588
589
590
591 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 585.530 kb on + strand, within rarA at 585.531 kb on - strand, within rarA at 585.531 kb on - strand, within rarA at 585.699 kb on - strand at 585.703 kb on - strand at 585.703 kb on - strand at 586.370 kb on - strand at 586.373 kb on - strand at 586.415 kb on + strand at 586.461 kb on - strand at 586.461 kb on - strand at 590.532 kb on - strand at 590.641 kb on - strand at 590.682 kb on - strand, within lrp at 590.682 kb on - strand, within lrp at 590.682 kb on - strand, within lrp at 590.736 kb on + strand, within lrp at 590.737 kb on - strand, within lrp at 590.737 kb on - strand, within lrp at 590.737 kb on - strand, within lrp at 590.795 kb on - strand, within lrp at 590.798 kb on - strand, within lrp at 590.798 kb on - strand, within lrp at 590.881 kb on - strand, within lrp at 590.940 kb on - strand, within lrp at 590.950 kb on - strand, within lrp at 591.111 kb on + strand at 591.112 kb on - strand at 591.115 kb on + strand at 591.116 kb on - strand at 591.122 kb on - strand at 591.122 kb on - strand at 591.125 kb on - strand at 591.244 kb on - strand at 591.322 kb on - strand at 591.343 kb on - strand at 591.365 kb on - strand at 591.365 kb on - strand at 591.478 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 585,530 + rarA NIAGMN_03280 0.88 -2.7 585,531 - rarA NIAGMN_03280 0.88 +0.1 585,531 - rarA NIAGMN_03280 0.88 -0.4 585,699 - -0.2 585,703 - +0.3 585,703 - +2.7 586,370 - -2.6 586,373 - +0.0 586,415 + +2.1 586,461 - +0.0 586,461 - -0.6 590,532 - +1.6 590,641 - +1.4 590,682 - lrp NIAGMN_03295 0.11 -2.4 590,682 - lrp NIAGMN_03295 0.11 -0.2 590,682 - lrp NIAGMN_03295 0.11 +1.1 590,736 + lrp NIAGMN_03295 0.22 -0.2 590,737 - lrp NIAGMN_03295 0.22 -3.2 590,737 - lrp NIAGMN_03295 0.22 -1.3 590,737 - lrp NIAGMN_03295 0.22 -2.9 590,795 - lrp NIAGMN_03295 0.34 +1.8 590,798 - lrp NIAGMN_03295 0.35 -2.3 590,798 - lrp NIAGMN_03295 0.35 +3.0 590,881 - lrp NIAGMN_03295 0.52 -0.1 590,940 - lrp NIAGMN_03295 0.63 +1.9 590,950 - lrp NIAGMN_03295 0.65 -3.6 591,111 + -0.2 591,112 - -1.4 591,115 + -2.1 591,116 - -0.9 591,122 - -2.4 591,122 - -1.5 591,125 - -1.4 591,244 - +1.5 591,322 - -2.3 591,343 - -0.7 591,365 - +0.0 591,365 - -0.5 591,478 - +1.1
Or see this region's nucleotide sequence