Strain Fitness in Escherichia coli ECRC102 around NIAGMN_02935

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthelD and yccF are separated by 122 nucleotidesyccF and yccS are separated by 9 nucleotides NIAGMN_02930: helD - DNA helicase IV, at 498,796 to 500,850 helD NIAGMN_02935: yccF - YccF domain-containing protein, at 500,973 to 501,419 yccF NIAGMN_02940: yccS - Inner membrane protein YccS, at 501,429 to 503,591 yccS Position (kb) 500 501 502Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 501.072 kb on - strand, within yccFat 501.141 kb on - strand, within yccFat 501.438 kb on - strandat 501.462 kb on + strandat 501.464 kb on + strandat 501.679 kb on + strand, within yccSat 501.706 kb on + strand, within yccSat 501.706 kb on + strand, within yccSat 501.771 kb on + strand, within yccSat 501.810 kb on + strand, within yccSat 501.815 kb on + strand, within yccSat 501.815 kb on + strand, within yccSat 501.816 kb on - strand, within yccSat 501.834 kb on + strand, within yccSat 501.834 kb on + strand, within yccSat 501.861 kb on + strand, within yccSat 501.861 kb on + strand, within yccSat 501.861 kb on + strand, within yccSat 501.861 kb on + strand, within yccSat 501.902 kb on + strand, within yccSat 501.902 kb on + strand, within yccSat 501.902 kb on + strand, within yccSat 502.159 kb on - strand, within yccSat 502.210 kb on - strand, within yccSat 502.361 kb on + strand, within yccSat 502.368 kb on - strand, within yccS

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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501,072 - yccF NIAGMN_02935 0.22 +1.5
501,141 - yccF NIAGMN_02935 0.38 +1.2
501,438 - +1.9
501,462 + -0.9
501,464 + -2.3
501,679 + yccS NIAGMN_02940 0.12 +0.5
501,706 + yccS NIAGMN_02940 0.13 +2.0
501,706 + yccS NIAGMN_02940 0.13 +1.6
501,771 + yccS NIAGMN_02940 0.16 -0.0
501,810 + yccS NIAGMN_02940 0.18 -0.8
501,815 + yccS NIAGMN_02940 0.18 +0.1
501,815 + yccS NIAGMN_02940 0.18 +0.6
501,816 - yccS NIAGMN_02940 0.18 +1.0
501,834 + yccS NIAGMN_02940 0.19 -0.4
501,834 + yccS NIAGMN_02940 0.19 -0.5
501,861 + yccS NIAGMN_02940 0.20 +3.3
501,861 + yccS NIAGMN_02940 0.20 -2.0
501,861 + yccS NIAGMN_02940 0.20 +0.1
501,861 + yccS NIAGMN_02940 0.20 -0.5
501,902 + yccS NIAGMN_02940 0.22 +0.7
501,902 + yccS NIAGMN_02940 0.22 -0.4
501,902 + yccS NIAGMN_02940 0.22 -0.0
502,159 - yccS NIAGMN_02940 0.34 +0.4
502,210 - yccS NIAGMN_02940 0.36 +0.8
502,361 + yccS NIAGMN_02940 0.43 -1.8
502,368 - yccS NIAGMN_02940 0.43 -3.0

Or see this region's nucleotide sequence