Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01995

Experiment: Casamino-acids

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntaraG and araF are separated by 69 nucleotidesaraF and ftnB are separated by 796 nucleotides NIAGMN_01990: araG - arabinose ABC transporter ATP-binding protein AraG, at 360,289 to 361,803 araG NIAGMN_01995: araF - arabinose ABC transporter substrate-binding protein AraF, at 361,873 to 362,862 araF NIAGMN_02000: ftnB - non-heme ferritin-like protein, at 363,659 to 364,162 ftnB Position (kb) 361 362 363Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 360.911 kb on - strand, within araGat 361.042 kb on - strand, within araGat 361.059 kb on - strand, within araGat 361.143 kb on - strand, within araGat 361.212 kb on - strand, within araGat 361.213 kb on + strand, within araGat 361.635 kb on - strand, within araGat 362.010 kb on + strand, within araFat 362.010 kb on + strand, within araFat 362.011 kb on - strand, within araFat 362.011 kb on - strand, within araFat 362.011 kb on - strand, within araFat 362.011 kb on - strand, within araFat 362.013 kb on - strand, within araFat 362.021 kb on - strand, within araFat 362.205 kb on + strand, within araFat 362.266 kb on - strand, within araFat 362.329 kb on - strand, within araFat 362.879 kb on - strandat 362.961 kb on - strandat 363.006 kb on - strandat 363.071 kb on - strandat 363.230 kb on + strandat 363.603 kb on + strandat 363.805 kb on + strand, within ftnB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
remove
360,911 - araG NIAGMN_01990 0.41 -2.1
361,042 - araG NIAGMN_01990 0.50 -1.8
361,059 - araG NIAGMN_01990 0.51 -2.1
361,143 - araG NIAGMN_01990 0.56 +0.5
361,212 - araG NIAGMN_01990 0.61 +1.4
361,213 + araG NIAGMN_01990 0.61 -2.3
361,635 - araG NIAGMN_01990 0.89 -1.2
362,010 + araF NIAGMN_01995 0.14 -0.2
362,010 + araF NIAGMN_01995 0.14 +0.2
362,011 - araF NIAGMN_01995 0.14 -0.5
362,011 - araF NIAGMN_01995 0.14 -0.2
362,011 - araF NIAGMN_01995 0.14 -0.9
362,011 - araF NIAGMN_01995 0.14 -0.3
362,013 - araF NIAGMN_01995 0.14 +1.9
362,021 - araF NIAGMN_01995 0.15 +0.8
362,205 + araF NIAGMN_01995 0.34 -2.1
362,266 - araF NIAGMN_01995 0.40 -3.2
362,329 - araF NIAGMN_01995 0.46 +0.9
362,879 - +0.4
362,961 - +2.2
363,006 - +0.9
363,071 - -0.0
363,230 + +1.3
363,603 + +0.1
363,805 + ftnB NIAGMN_02000 0.29 -2.8

Or see this region's nucleotide sequence