Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01945

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcheA and motB are separated by 4 nucleotidesmotB and motA overlap by 4 nucleotides NIAGMN_01940: cheA - chemotaxis protein CheA, at 350,870 to 352,834 cheA NIAGMN_01945: motB - flagellar motor protein MotB, at 352,839 to 353,765 motB NIAGMN_01950: motA - flagellar motor stator protein MotA, at 353,762 to 354,649 motA Position (kb) 352 353 354Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 351.844 kb on - strand, within cheAat 351.905 kb on + strand, within cheAat 352.010 kb on - strand, within cheAat 352.452 kb on - strand, within cheAat 352.482 kb on + strand, within cheAat 352.482 kb on + strand, within cheAat 352.821 kb on - strandat 352.821 kb on - strandat 353.196 kb on - strand, within motBat 354.250 kb on + strand, within motAat 354.424 kb on + strand, within motAat 354.426 kb on + strand, within motAat 354.565 kb on - strandat 354.631 kb on - strandat 354.636 kb on - strandat 354.636 kb on - strandat 354.644 kb on - strandat 354.644 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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351,844 - cheA NIAGMN_01940 0.50 +3.1
351,905 + cheA NIAGMN_01940 0.53 +2.1
352,010 - cheA NIAGMN_01940 0.58 -0.6
352,452 - cheA NIAGMN_01940 0.81 -0.5
352,482 + cheA NIAGMN_01940 0.82 +0.9
352,482 + cheA NIAGMN_01940 0.82 +0.9
352,821 - +1.4
352,821 - -2.4
353,196 - motB NIAGMN_01945 0.39 -2.8
354,250 + motA NIAGMN_01950 0.55 +0.5
354,424 + motA NIAGMN_01950 0.75 +2.5
354,426 + motA NIAGMN_01950 0.75 -3.1
354,565 - -0.5
354,631 - +0.0
354,636 - -0.3
354,636 - +0.2
354,644 - -2.6
354,644 - -0.3

Or see this region's nucleotide sequence