Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01365

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeaH and cdgI are separated by 278 nucleotidescdgI and dgcJ are separated by 180 nucleotides NIAGMN_01360: yeaH - UPF0229 protein YeaH, at 246,142 to 247,425 yeaH NIAGMN_01365: cdgI - putative diguanylate cyclase CdgI, at 247,704 to 249,047 cdgI NIAGMN_01370: dgcJ - diguanylate cyclase DgcJ, at 249,228 to 250,718 dgcJ Position (kb) 247 248 249 250Strain fitness (log2 ratio) -2 -1 0 1 2at 246.991 kb on + strand, within yeaHat 247.012 kb on + strand, within yeaHat 247.026 kb on + strand, within yeaHat 247.262 kb on - strand, within yeaHat 247.324 kb on - strandat 248.241 kb on + strand, within cdgIat 248.895 kb on + strand, within cdgIat 248.958 kb on - strandat 248.987 kb on + strandat 249.046 kb on - strandat 249.391 kb on - strand, within dgcJat 249.907 kb on - strand, within dgcJat 249.923 kb on - strand, within dgcJ

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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246,991 + yeaH NIAGMN_01360 0.66 +0.5
247,012 + yeaH NIAGMN_01360 0.68 -2.3
247,026 + yeaH NIAGMN_01360 0.69 -1.5
247,262 - yeaH NIAGMN_01360 0.87 -0.1
247,324 - -0.4
248,241 + cdgI NIAGMN_01365 0.40 +1.1
248,895 + cdgI NIAGMN_01365 0.89 -0.5
248,958 - -2.2
248,987 + +2.2
249,046 - +1.2
249,391 - dgcJ NIAGMN_01370 0.11 -0.2
249,907 - dgcJ NIAGMN_01370 0.46 +0.7
249,923 - dgcJ NIAGMN_01370 0.47 -1.3

Or see this region's nucleotide sequence