Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00935

Experiment: Casamino-acids

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntaroH and ydiE are separated by 131 nucleotidesydiE and selO are separated by 3 nucleotides NIAGMN_00930: aroH - 3-deoxy-7-phosphoheptulonate synthase AroH, at 163,720 to 164,766 aroH NIAGMN_00935: ydiE - Uncharacterized protein YdiE, at 164,898 to 165,089 ydiE NIAGMN_00940: selO - protein adenylyltransferase SelO, at 165,093 to 166,529 selO Position (kb) 164 165 166Strain fitness (log2 ratio) -2 -1 0 1at 164.338 kb on - strand, within aroHat 164.409 kb on + strand, within aroHat 164.906 kb on + strandat 165.610 kb on - strand, within selOat 165.733 kb on + strand, within selOat 165.843 kb on + strand, within selOat 165.844 kb on - strand, within selO

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
remove
164,338 - aroH NIAGMN_00930 0.59 +1.5
164,409 + aroH NIAGMN_00930 0.66 -0.5
164,906 + -0.3
165,610 - selO NIAGMN_00940 0.36 -1.5
165,733 + selO NIAGMN_00940 0.45 -2.6
165,843 + selO NIAGMN_00940 0.52 +1.1
165,844 - selO NIAGMN_00940 0.52 -0.8

Or see this region's nucleotide sequence