Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00930

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntppsR and aroH are separated by 156 nucleotidesaroH and ydiE are separated by 131 nucleotidesydiE and selO are separated by 3 nucleotides NIAGMN_00925: ppsR - posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR, at 162,730 to 163,563 ppsR NIAGMN_00930: aroH - 3-deoxy-7-phosphoheptulonate synthase AroH, at 163,720 to 164,766 aroH NIAGMN_00935: ydiE - Uncharacterized protein YdiE, at 164,898 to 165,089 ydiE NIAGMN_00940: selO - protein adenylyltransferase SelO, at 165,093 to 166,529 selO Position (kb) 163 164 165Strain fitness (log2 ratio) -2 -1 0 1at 163.788 kb on - strandat 164.338 kb on - strand, within aroHat 164.409 kb on + strand, within aroHat 164.906 kb on + strandat 165.610 kb on - strand, within selOat 165.733 kb on + strand, within selO

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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163,788 - +0.8
164,338 - aroH NIAGMN_00930 0.59 +1.5
164,409 + aroH NIAGMN_00930 0.66 -0.5
164,906 + -0.3
165,610 - selO NIAGMN_00940 0.36 -1.5
165,733 + selO NIAGMN_00940 0.45 -2.6

Or see this region's nucleotide sequence