Strain Fitness in Escherichia coli ECRC101 around MCAODC_23735

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-IS3 and MCAODC_23730 overlap by 1 nucleotidesMCAODC_23730 and MCAODC_23735 overlap by 35 nucleotidesMCAODC_23735 and MCAODC_23740 are separated by 840 nucleotides MCAODC_23725: tnp-IS3 - IS3 family transposase, at 1,462,409 to 1,462,735 tnp-IS3 MCAODC_23730: MCAODC_23730 - IS3 family transposase, at 1,462,735 to 1,463,622 _23730 MCAODC_23735: MCAODC_23735 - AMP nucleosidase, at 1,463,588 to 1,463,677 _23735 MCAODC_23740: MCAODC_23740 - DUF3987 domain-containing protein, at 1,464,518 to 1,465,903 _23740 Position (kb) 1463 1464Strain fitness (log2 ratio) -2 -1 0 1 2at 1463.830 kb on - strandat 1463.841 kb on - strandat 1464.185 kb on - strandat 1464.233 kb on + strandat 1464.233 kb on + strandat 1464.254 kb on - strandat 1464.298 kb on + strandat 1464.356 kb on + strandat 1464.494 kb on - strandat 1464.496 kb on - strandat 1464.650 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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1,463,830 - -2.0
1,463,841 - +2.2
1,464,185 - +0.2
1,464,233 + -2.7
1,464,233 + -2.2
1,464,254 - +1.7
1,464,298 + -1.1
1,464,356 + +0.5
1,464,494 - +0.4
1,464,496 - +1.0
1,464,650 + +0.5

Or see this region's nucleotide sequence