Strain Fitness in Escherichia coli ECRC101 around MCAODC_21315

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_21305 and MCAODC_21310 are separated by 43 nucleotidesMCAODC_21310 and MCAODC_21315 are separated by 26 nucleotidesMCAODC_21315 and yjdB are separated by 13 nucleotidesyjdB and MCAODC_21325 are separated by 7 nucleotides MCAODC_21305: MCAODC_21305 - phage tail tape measure protein, at 1,063,087 to 1,065,732 _21305 MCAODC_21310: MCAODC_21310 - phage tail assembly protein T, at 1,065,776 to 1,066,084 _21310 MCAODC_21315: MCAODC_21315 - phage minor tail protein G, at 1,066,111 to 1,066,533 _21315 MCAODC_21320: yjdB - phage tail protein, at 1,066,547 to 1,067,299 yjdB MCAODC_21325: MCAODC_21325 - phage tail protein, at 1,067,307 to 1,067,702 _21325 Position (kb) 1066 1067Strain fitness (log2 ratio) -2 -1 0 1at 1067.329 kb on + strandat 1067.330 kb on - strandat 1067.330 kb on - strandat 1067.352 kb on + strand, within MCAODC_21325at 1067.393 kb on + strand, within MCAODC_21325at 1067.513 kb on + strand, within MCAODC_21325at 1067.514 kb on - strand, within MCAODC_21325

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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1,067,329 + +0.0
1,067,330 - +0.9
1,067,330 - +1.0
1,067,352 + MCAODC_21325 0.11 +0.1
1,067,393 + MCAODC_21325 0.22 -2.4
1,067,513 + MCAODC_21325 0.52 +0.8
1,067,514 - MCAODC_21325 0.52 +0.6

Or see this region's nucleotide sequence