Strain Fitness in Escherichia coli ECRC101 around MCAODC_20530

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntwzy and wcaA overlap by 4 nucleotideswcaA and galF are separated by 318 nucleotides MCAODC_20525: wzy - O157 family O-antigen polymerase, at 913,201 to 914,385 wzy MCAODC_20530: wcaA - glycosyl transferase, at 914,382 to 915,164 wcaA MCAODC_20535: galF - UTP--glucose-1-phosphate uridylyltransferase GalF, at 915,483 to 916,376 galF Position (kb) 914 915 916Strain fitness (log2 ratio) -2 -1 0 1 2 3at 913.500 kb on - strand, within wzyat 913.677 kb on - strand, within wzyat 913.699 kb on + strand, within wzyat 913.735 kb on - strand, within wzyat 913.820 kb on - strand, within wzyat 914.095 kb on - strand, within wzyat 914.137 kb on + strand, within wzyat 914.462 kb on - strand, within wcaAat 914.504 kb on - strand, within wcaAat 914.717 kb on - strand, within wcaAat 915.111 kb on - strandat 915.301 kb on - strandat 915.309 kb on - strandat 915.377 kb on - strandat 915.386 kb on - strandat 915.551 kb on - strandat 915.596 kb on - strand, within galFat 915.696 kb on - strand, within galFat 915.944 kb on - strand, within galFat 916.033 kb on - strand, within galFat 916.079 kb on + strand, within galFat 916.104 kb on - strand, within galFat 916.123 kb on - strand, within galFat 916.123 kb on - strand, within galF

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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913,500 - wzy MCAODC_20525 0.25 +0.1
913,677 - wzy MCAODC_20525 0.40 +3.1
913,699 + wzy MCAODC_20525 0.42 +1.1
913,735 - wzy MCAODC_20525 0.45 +2.0
913,820 - wzy MCAODC_20525 0.52 +0.4
914,095 - wzy MCAODC_20525 0.75 +1.2
914,137 + wzy MCAODC_20525 0.79 +1.5
914,462 - wcaA MCAODC_20530 0.10 +1.0
914,504 - wcaA MCAODC_20530 0.16 +1.0
914,717 - wcaA MCAODC_20530 0.43 -0.6
915,111 - -1.1
915,301 - +0.2
915,309 - -2.1
915,377 - -0.9
915,386 - -1.0
915,551 - +0.6
915,596 - galF MCAODC_20535 0.13 +0.7
915,696 - galF MCAODC_20535 0.24 +0.1
915,944 - galF MCAODC_20535 0.52 -0.2
916,033 - galF MCAODC_20535 0.62 -0.3
916,079 + galF MCAODC_20535 0.67 +0.9
916,104 - galF MCAODC_20535 0.69 +1.9
916,123 - galF MCAODC_20535 0.72 +0.0
916,123 - galF MCAODC_20535 0.72 -0.5

Or see this region's nucleotide sequence