Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fliD and fliS are separated by 24 nucleotides fliS and fliT overlap by 1 nucleotides fliT and amyA are separated by 77 nucleotides
MCAODC_19620: fliD - flagellar filament capping protein FliD, at 755,673 to 757,070
fliD
MCAODC_19625: fliS - flagellar export chaperone FliS, at 757,095 to 757,505
fliS
MCAODC_19630: fliT - flagella biosynthesis regulatory protein FliT, at 757,505 to 757,870
fliT
MCAODC_19635: amyA - alpha-amylase, at 757,948 to 759,435
amyA
Position (kb) 757
758 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 756.510 kb on - strand, within fliD at 756.520 kb on + strand, within fliD at 756.525 kb on - strand, within fliD at 756.525 kb on - strand, within fliD at 756.653 kb on + strand, within fliD at 756.656 kb on + strand, within fliD at 756.656 kb on + strand, within fliD at 756.656 kb on + strand, within fliD at 756.656 kb on + strand, within fliD at 756.675 kb on + strand, within fliD at 756.781 kb on + strand, within fliD at 756.920 kb on + strand, within fliD at 756.921 kb on - strand, within fliD at 757.029 kb on + strand at 757.034 kb on - strand at 757.058 kb on + strand at 757.058 kb on + strand at 757.098 kb on + strand at 757.122 kb on + strand at 757.122 kb on + strand at 757.359 kb on + strand, within fliS at 757.359 kb on + strand, within fliS at 757.361 kb on + strand, within fliS at 757.361 kb on + strand, within fliS at 757.361 kb on + strand, within fliS at 757.361 kb on + strand, within fliS at 757.361 kb on + strand, within fliS at 757.362 kb on - strand, within fliS at 757.362 kb on - strand, within fliS at 757.365 kb on + strand, within fliS at 757.365 kb on + strand, within fliS at 757.365 kb on + strand, within fliS at 757.365 kb on + strand, within fliS at 757.367 kb on + strand, within fliS at 757.367 kb on + strand, within fliS at 757.435 kb on + strand, within fliS at 757.445 kb on + strand, within fliS at 757.524 kb on + strand at 757.527 kb on - strand at 757.569 kb on + strand, within fliT at 757.622 kb on + strand, within fliT at 757.622 kb on + strand, within fliT at 757.622 kb on + strand, within fliT at 757.622 kb on + strand, within fliT at 757.623 kb on - strand, within fliT at 757.737 kb on + strand, within fliT at 757.737 kb on + strand, within fliT at 757.738 kb on - strand, within fliT at 757.920 kb on + strand at 757.920 kb on + strand at 757.920 kb on + strand at 757.920 kb on + strand at 757.920 kb on + strand at 757.921 kb on - strand at 757.954 kb on - strand at 757.968 kb on - strand at 757.968 kb on - strand at 757.968 kb on - strand at 757.987 kb on + strand at 758.052 kb on + strand at 758.080 kb on + strand at 758.123 kb on - strand, within amyA at 758.129 kb on + strand, within amyA at 758.252 kb on + strand, within amyA at 758.252 kb on + strand, within amyA at 758.289 kb on + strand, within amyA at 758.406 kb on + strand, within amyA at 758.427 kb on + strand, within amyA at 758.473 kb on - strand, within amyA at 758.599 kb on + strand, within amyA at 758.599 kb on + strand, within amyA at 758.599 kb on + strand, within amyA at 758.599 kb on + strand, within amyA at 758.664 kb on + strand, within amyA at 758.680 kb on + strand, within amyA at 758.702 kb on + strand, within amyA at 758.702 kb on + strand, within amyA at 758.730 kb on + strand, within amyA at 758.730 kb on + strand, within amyA at 758.776 kb on + strand, within amyA at 758.777 kb on - strand, within amyA
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 756,510 - fliD MCAODC_19620 0.60 -0.3 756,520 + fliD MCAODC_19620 0.61 +0.1 756,525 - fliD MCAODC_19620 0.61 +0.5 756,525 - fliD MCAODC_19620 0.61 -1.8 756,653 + fliD MCAODC_19620 0.70 -2.5 756,656 + fliD MCAODC_19620 0.70 +0.9 756,656 + fliD MCAODC_19620 0.70 -0.7 756,656 + fliD MCAODC_19620 0.70 -0.4 756,656 + fliD MCAODC_19620 0.70 -2.9 756,675 + fliD MCAODC_19620 0.72 -0.1 756,781 + fliD MCAODC_19620 0.79 +0.4 756,920 + fliD MCAODC_19620 0.89 -0.4 756,921 - fliD MCAODC_19620 0.89 -0.6 757,029 + -0.1 757,034 - -0.1 757,058 + +0.6 757,058 + +0.2 757,098 + -2.9 757,122 + -2.7 757,122 + +0.8 757,359 + fliS MCAODC_19625 0.64 +1.4 757,359 + fliS MCAODC_19625 0.64 +0.2 757,361 + fliS MCAODC_19625 0.65 +1.2 757,361 + fliS MCAODC_19625 0.65 +1.3 757,361 + fliS MCAODC_19625 0.65 -0.7 757,361 + fliS MCAODC_19625 0.65 -0.2 757,361 + fliS MCAODC_19625 0.65 -1.7 757,362 - fliS MCAODC_19625 0.65 +0.4 757,362 - fliS MCAODC_19625 0.65 -0.4 757,365 + fliS MCAODC_19625 0.66 -0.5 757,365 + fliS MCAODC_19625 0.66 -0.5 757,365 + fliS MCAODC_19625 0.66 -0.0 757,365 + fliS MCAODC_19625 0.66 -1.1 757,367 + fliS MCAODC_19625 0.66 +0.9 757,367 + fliS MCAODC_19625 0.66 -2.7 757,435 + fliS MCAODC_19625 0.83 +0.9 757,445 + fliS MCAODC_19625 0.85 +0.5 757,524 + -0.1 757,527 - -0.9 757,569 + fliT MCAODC_19630 0.17 +0.7 757,622 + fliT MCAODC_19630 0.32 +0.3 757,622 + fliT MCAODC_19630 0.32 +0.1 757,622 + fliT MCAODC_19630 0.32 -0.1 757,622 + fliT MCAODC_19630 0.32 +0.3 757,623 - fliT MCAODC_19630 0.32 +0.9 757,737 + fliT MCAODC_19630 0.63 +0.2 757,737 + fliT MCAODC_19630 0.63 +0.1 757,738 - fliT MCAODC_19630 0.64 -2.4 757,920 + -1.1 757,920 + +0.2 757,920 + -0.1 757,920 + +1.2 757,920 + +0.2 757,921 - +2.2 757,954 - -0.1 757,968 - +0.4 757,968 - -0.9 757,968 - -0.4 757,987 + +0.9 758,052 + +0.9 758,080 + -0.3 758,123 - amyA MCAODC_19635 0.12 +4.3 758,129 + amyA MCAODC_19635 0.12 +1.0 758,252 + amyA MCAODC_19635 0.20 -0.4 758,252 + amyA MCAODC_19635 0.20 -0.7 758,289 + amyA MCAODC_19635 0.23 +1.0 758,406 + amyA MCAODC_19635 0.31 -0.6 758,427 + amyA MCAODC_19635 0.32 -0.8 758,473 - amyA MCAODC_19635 0.35 -1.1 758,599 + amyA MCAODC_19635 0.44 +0.7 758,599 + amyA MCAODC_19635 0.44 +0.8 758,599 + amyA MCAODC_19635 0.44 +0.1 758,599 + amyA MCAODC_19635 0.44 -2.0 758,664 + amyA MCAODC_19635 0.48 +0.8 758,680 + amyA MCAODC_19635 0.49 +0.1 758,702 + amyA MCAODC_19635 0.51 -0.1 758,702 + amyA MCAODC_19635 0.51 -2.4 758,730 + amyA MCAODC_19635 0.53 +1.4 758,730 + amyA MCAODC_19635 0.53 +0.7 758,776 + amyA MCAODC_19635 0.56 +0.6 758,777 - amyA MCAODC_19635 0.56 -2.5
Or see this region's nucleotide sequence