Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_19390 and MCAODC_19395 are separated by 15 nucleotides MCAODC_19395 and MCAODC_19400 are separated by 298 nucleotides MCAODC_19400 and MCAODC_19405 are separated by 21 nucleotides MCAODC_19405 and MCAODC_19410 are separated by 10 nucleotides MCAODC_19410 and MCAODC_19415 are separated by 11 nucleotides MCAODC_19415 and MCAODC_19420 overlap by 4 nucleotides
MCAODC_19390: MCAODC_19390 - Putative transmembrane protein, at 723,779 to 724,429
_19390
MCAODC_19395: MCAODC_19395 - transcriptional regulator, at 724,445 to 724,849
_19395
MCAODC_19400: MCAODC_19400 - DNA-binding protein, at 725,148 to 725,351
_19400
MCAODC_19405: MCAODC_19405 - DUF4761 domain-containing protein, at 725,373 to 725,723
_19405
MCAODC_19410: MCAODC_19410 - hypothetical protein, at 725,734 to 726,012
_19410
MCAODC_19415: MCAODC_19415 - DUF4754 domain-containing protein, at 726,024 to 726,266
_19415
MCAODC_19420: MCAODC_19420 - Membrane protein, at 726,263 to 726,376
_19420
Position (kb) 725
726 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 724.163 kb on - strand, within MCAODC_19390 at 724.211 kb on - strand, within MCAODC_19390 at 724.243 kb on + strand, within MCAODC_19390 at 724.337 kb on - strand, within MCAODC_19390 at 724.351 kb on - strand, within MCAODC_19390 at 724.351 kb on - strand, within MCAODC_19390 at 724.444 kb on - strand at 724.457 kb on - strand at 724.468 kb on - strand at 724.468 kb on - strand at 724.901 kb on - strand at 724.903 kb on + strand at 724.904 kb on - strand at 724.916 kb on + strand at 724.917 kb on - strand at 724.918 kb on + strand at 724.918 kb on + strand at 724.918 kb on + strand at 724.918 kb on + strand at 724.918 kb on + strand at 724.918 kb on + strand at 724.919 kb on - strand at 724.919 kb on - strand at 725.041 kb on + strand at 725.063 kb on - strand at 725.095 kb on - strand at 725.141 kb on + strand at 725.157 kb on - strand at 725.158 kb on + strand at 725.159 kb on - strand at 725.169 kb on - strand, within MCAODC_19400 at 725.169 kb on - strand, within MCAODC_19400 at 725.187 kb on + strand, within MCAODC_19400 at 725.187 kb on + strand, within MCAODC_19400 at 725.191 kb on + strand, within MCAODC_19400 at 725.191 kb on + strand, within MCAODC_19400 at 725.215 kb on + strand, within MCAODC_19400 at 725.222 kb on + strand, within MCAODC_19400 at 725.223 kb on - strand, within MCAODC_19400 at 725.223 kb on - strand, within MCAODC_19400 at 725.223 kb on - strand, within MCAODC_19400 at 725.232 kb on - strand, within MCAODC_19400 at 725.232 kb on - strand, within MCAODC_19400 at 725.234 kb on + strand, within MCAODC_19400 at 725.234 kb on + strand, within MCAODC_19400 at 725.235 kb on - strand, within MCAODC_19400 at 725.267 kb on + strand, within MCAODC_19400 at 725.309 kb on - strand, within MCAODC_19400 at 725.327 kb on - strand, within MCAODC_19400 at 725.349 kb on + strand at 725.349 kb on + strand at 725.432 kb on - strand, within MCAODC_19405 at 725.472 kb on + strand, within MCAODC_19405 at 725.654 kb on - strand, within MCAODC_19405 at 725.655 kb on + strand, within MCAODC_19405 at 725.655 kb on + strand, within MCAODC_19405 at 725.655 kb on + strand, within MCAODC_19405 at 725.656 kb on - strand, within MCAODC_19405 at 725.656 kb on - strand, within MCAODC_19405 at 725.759 kb on + strand at 725.851 kb on + strand, within MCAODC_19410 at 726.246 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 724,163 - MCAODC_19390 0.59 -0.2 724,211 - MCAODC_19390 0.66 +1.0 724,243 + MCAODC_19390 0.71 +0.9 724,337 - MCAODC_19390 0.86 +0.4 724,351 - MCAODC_19390 0.88 -0.4 724,351 - MCAODC_19390 0.88 +1.2 724,444 - -0.6 724,457 - -0.1 724,468 - -1.6 724,468 - +0.7 724,901 - +0.9 724,903 + -3.8 724,904 - +0.3 724,916 + -0.8 724,917 - +0.3 724,918 + +0.5 724,918 + -0.8 724,918 + +0.2 724,918 + +0.1 724,918 + -0.1 724,918 + -0.3 724,919 - -0.4 724,919 - +0.7 725,041 + -2.5 725,063 - -0.2 725,095 - +1.2 725,141 + +1.6 725,157 - +0.2 725,158 + +0.7 725,159 - +0.0 725,169 - MCAODC_19400 0.10 +1.6 725,169 - MCAODC_19400 0.10 +0.4 725,187 + MCAODC_19400 0.19 -1.1 725,187 + MCAODC_19400 0.19 -0.9 725,191 + MCAODC_19400 0.21 +0.1 725,191 + MCAODC_19400 0.21 -1.9 725,215 + MCAODC_19400 0.33 +0.3 725,222 + MCAODC_19400 0.36 -0.3 725,223 - MCAODC_19400 0.37 +0.6 725,223 - MCAODC_19400 0.37 +0.5 725,223 - MCAODC_19400 0.37 -0.2 725,232 - MCAODC_19400 0.41 -1.7 725,232 - MCAODC_19400 0.41 -1.0 725,234 + MCAODC_19400 0.42 -0.3 725,234 + MCAODC_19400 0.42 -0.3 725,235 - MCAODC_19400 0.43 +0.5 725,267 + MCAODC_19400 0.58 -2.3 725,309 - MCAODC_19400 0.79 -1.0 725,327 - MCAODC_19400 0.88 +0.9 725,349 + -1.0 725,349 + -1.5 725,432 - MCAODC_19405 0.17 +1.8 725,472 + MCAODC_19405 0.28 +0.1 725,654 - MCAODC_19405 0.80 +0.3 725,655 + MCAODC_19405 0.80 -0.6 725,655 + MCAODC_19405 0.80 +1.0 725,655 + MCAODC_19405 0.80 -1.7 725,656 - MCAODC_19405 0.81 +1.3 725,656 - MCAODC_19405 0.81 -0.7 725,759 + +0.9 725,851 + MCAODC_19410 0.42 -0.1 726,246 - -0.7
Or see this region's nucleotide sequence