Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydhU and MCAODC_18095 overlap by 4 nucleotides MCAODC_18095 and ydhW are separated by 63 nucleotides ydhW and ydhV are separated by 12 nucleotides
MCAODC_18090: ydhU - Putative cytochrome YdhU, at 478,543 to 479,328
ydhU
MCAODC_18095: MCAODC_18095 - Putative oxidoreductase Fe-S subunit, at 479,325 to 479,993
_18095
MCAODC_18100: ydhW - YdhW family putative oxidoreductase system protein, at 480,057 to 480,695
ydhW
MCAODC_18105: ydhV - aldehyde ferredoxin oxidoreductase, at 480,708 to 482,810
ydhV
Position (kb) 480
481 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 479.075 kb on - strand, within ydhU at 479.123 kb on + strand, within ydhU at 479.225 kb on - strand, within ydhU at 479.280 kb on - strand at 479.280 kb on - strand at 479.328 kb on + strand at 479.411 kb on - strand, within MCAODC_18095 at 479.571 kb on - strand, within MCAODC_18095 at 479.608 kb on + strand, within MCAODC_18095 at 480.079 kb on - strand at 480.097 kb on - strand at 480.166 kb on - strand, within ydhW at 480.174 kb on + strand, within ydhW at 480.175 kb on - strand, within ydhW at 480.175 kb on - strand, within ydhW at 480.175 kb on - strand, within ydhW at 480.241 kb on + strand, within ydhW at 480.242 kb on - strand, within ydhW at 480.242 kb on - strand, within ydhW at 480.242 kb on - strand, within ydhW at 480.245 kb on - strand, within ydhW at 480.245 kb on - strand, within ydhW at 480.398 kb on - strand, within ydhW at 480.398 kb on - strand, within ydhW at 480.398 kb on - strand, within ydhW at 480.398 kb on - strand, within ydhW at 480.401 kb on - strand, within ydhW at 480.401 kb on - strand, within ydhW at 480.699 kb on - strand at 480.848 kb on + strand at 480.882 kb on - strand at 480.948 kb on - strand, within ydhV at 480.993 kb on - strand, within ydhV at 480.999 kb on - strand, within ydhV at 481.011 kb on + strand, within ydhV at 481.011 kb on + strand, within ydhV at 481.012 kb on - strand, within ydhV at 481.091 kb on - strand, within ydhV at 481.185 kb on - strand, within ydhV at 481.190 kb on - strand, within ydhV at 481.194 kb on - strand, within ydhV at 481.220 kb on - strand, within ydhV at 481.238 kb on - strand, within ydhV at 481.350 kb on - strand, within ydhV at 481.484 kb on - strand, within ydhV at 481.646 kb on - strand, within ydhV at 481.646 kb on - strand, within ydhV at 481.646 kb on - strand, within ydhV at 481.646 kb on - strand, within ydhV at 481.650 kb on - strand, within ydhV at 481.673 kb on - strand, within ydhV at 481.677 kb on - strand, within ydhV at 481.677 kb on - strand, within ydhV at 481.683 kb on + strand, within ydhV at 481.684 kb on - strand, within ydhV at 481.684 kb on - strand, within ydhV at 481.684 kb on - strand, within ydhV at 481.684 kb on - strand, within ydhV
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 479,075 - ydhU MCAODC_18090 0.68 +0.8 479,123 + ydhU MCAODC_18090 0.74 -0.2 479,225 - ydhU MCAODC_18090 0.87 -0.0 479,280 - -0.8 479,280 - +0.2 479,328 + +0.8 479,411 - MCAODC_18095 0.13 -1.5 479,571 - MCAODC_18095 0.37 +0.3 479,608 + MCAODC_18095 0.42 -1.1 480,079 - +0.4 480,097 - +0.7 480,166 - ydhW MCAODC_18100 0.17 -0.3 480,174 + ydhW MCAODC_18100 0.18 +0.4 480,175 - ydhW MCAODC_18100 0.18 +0.6 480,175 - ydhW MCAODC_18100 0.18 -1.2 480,175 - ydhW MCAODC_18100 0.18 -1.6 480,241 + ydhW MCAODC_18100 0.29 -0.2 480,242 - ydhW MCAODC_18100 0.29 +0.2 480,242 - ydhW MCAODC_18100 0.29 -0.5 480,242 - ydhW MCAODC_18100 0.29 +1.5 480,245 - ydhW MCAODC_18100 0.29 -2.7 480,245 - ydhW MCAODC_18100 0.29 -0.4 480,398 - ydhW MCAODC_18100 0.53 -1.1 480,398 - ydhW MCAODC_18100 0.53 +1.7 480,398 - ydhW MCAODC_18100 0.53 -1.1 480,398 - ydhW MCAODC_18100 0.53 -0.1 480,401 - ydhW MCAODC_18100 0.54 -1.5 480,401 - ydhW MCAODC_18100 0.54 -1.2 480,699 - -0.6 480,848 + +3.9 480,882 - +0.5 480,948 - ydhV MCAODC_18105 0.11 -1.6 480,993 - ydhV MCAODC_18105 0.14 -1.1 480,999 - ydhV MCAODC_18105 0.14 +0.0 481,011 + ydhV MCAODC_18105 0.14 -0.6 481,011 + ydhV MCAODC_18105 0.14 +0.1 481,012 - ydhV MCAODC_18105 0.14 +0.1 481,091 - ydhV MCAODC_18105 0.18 +0.7 481,185 - ydhV MCAODC_18105 0.23 -0.5 481,190 - ydhV MCAODC_18105 0.23 -2.4 481,194 - ydhV MCAODC_18105 0.23 -0.5 481,220 - ydhV MCAODC_18105 0.24 +1.1 481,238 - ydhV MCAODC_18105 0.25 +0.7 481,350 - ydhV MCAODC_18105 0.31 -2.3 481,484 - ydhV MCAODC_18105 0.37 -1.1 481,646 - ydhV MCAODC_18105 0.45 -1.1 481,646 - ydhV MCAODC_18105 0.45 +0.6 481,646 - ydhV MCAODC_18105 0.45 -2.4 481,646 - ydhV MCAODC_18105 0.45 +1.2 481,650 - ydhV MCAODC_18105 0.45 -0.3 481,673 - ydhV MCAODC_18105 0.46 +0.1 481,677 - ydhV MCAODC_18105 0.46 +0.3 481,677 - ydhV MCAODC_18105 0.46 +0.6 481,683 + ydhV MCAODC_18105 0.46 +1.8 481,684 - ydhV MCAODC_18105 0.46 +1.0 481,684 - ydhV MCAODC_18105 0.46 -1.3 481,684 - ydhV MCAODC_18105 0.46 +0.0 481,684 - ydhV MCAODC_18105 0.46 +0.9
Or see this region's nucleotide sequence