Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt malI and malX are separated by 174 nucleotides malX and malY are separated by 9 nucleotides
MCAODC_17815: malI - mal regulon transcriptional regulator MalI, at 427,050 to 428,078
malI
MCAODC_17820: malX - PTS maltose transporter subunit IICB, at 428,253 to 429,845
malX
MCAODC_17825: malY - bifunctional maltose regulon transcriptional repressor/cystathionine beta-lyase MalY, at 429,855 to 431,027
malY
Position (kb) 428
429
430 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 427.330 kb on + strand, within malI at 427.365 kb on + strand, within malI at 427.380 kb on - strand, within malI at 427.616 kb on - strand, within malI at 427.616 kb on - strand, within malI at 427.857 kb on + strand, within malI at 427.858 kb on - strand, within malI at 427.998 kb on - strand at 427.998 kb on - strand at 428.090 kb on - strand at 428.090 kb on - strand at 428.133 kb on - strand at 428.133 kb on - strand at 428.160 kb on - strand at 428.170 kb on - strand at 428.170 kb on - strand at 428.252 kb on + strand at 428.253 kb on - strand at 428.306 kb on - strand at 428.336 kb on - strand at 428.369 kb on + strand at 428.370 kb on - strand at 428.370 kb on - strand at 428.370 kb on - strand at 428.381 kb on + strand at 428.441 kb on + strand, within malX at 428.888 kb on - strand, within malX at 428.894 kb on + strand, within malX at 429.180 kb on + strand, within malX at 429.310 kb on - strand, within malX at 429.444 kb on + strand, within malX at 429.444 kb on + strand, within malX at 429.444 kb on + strand, within malX at 429.445 kb on - strand, within malX at 429.486 kb on + strand, within malX at 429.486 kb on + strand, within malX at 429.600 kb on + strand, within malX at 429.629 kb on - strand, within malX at 429.659 kb on + strand, within malX at 429.660 kb on - strand, within malX at 429.668 kb on + strand, within malX at 429.695 kb on + strand at 429.708 kb on - strand at 429.746 kb on - strand at 429.748 kb on + strand at 429.748 kb on + strand at 429.755 kb on + strand at 429.755 kb on + strand at 429.755 kb on + strand at 429.756 kb on - strand at 429.756 kb on - strand at 429.756 kb on - strand at 429.803 kb on - strand at 429.830 kb on + strand at 429.831 kb on - strand at 429.849 kb on + strand at 429.849 kb on + strand at 429.854 kb on + strand at 429.854 kb on + strand at 429.854 kb on + strand at 429.913 kb on - strand at 430.098 kb on + strand, within malY at 430.098 kb on + strand, within malY at 430.099 kb on - strand, within malY at 430.129 kb on - strand, within malY at 430.129 kb on - strand, within malY at 430.143 kb on - strand, within malY at 430.146 kb on + strand, within malY at 430.146 kb on + strand, within malY at 430.146 kb on + strand, within malY at 430.146 kb on + strand, within malY at 430.147 kb on - strand, within malY at 430.147 kb on - strand, within malY at 430.147 kb on - strand, within malY at 430.147 kb on - strand, within malY at 430.147 kb on - strand, within malY at 430.147 kb on - strand, within malY at 430.148 kb on + strand, within malY at 430.148 kb on + strand, within malY at 430.149 kb on - strand, within malY at 430.149 kb on - strand, within malY at 430.149 kb on - strand, within malY at 430.228 kb on - strand, within malY at 430.349 kb on + strand, within malY at 430.472 kb on + strand, within malY at 430.508 kb on + strand, within malY at 430.562 kb on + strand, within malY at 430.592 kb on + strand, within malY at 430.667 kb on - strand, within malY at 430.837 kb on + strand, within malY
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 427,330 + malI MCAODC_17815 0.27 -0.7 427,365 + malI MCAODC_17815 0.31 -0.8 427,380 - malI MCAODC_17815 0.32 +0.9 427,616 - malI MCAODC_17815 0.55 +0.6 427,616 - malI MCAODC_17815 0.55 -0.4 427,857 + malI MCAODC_17815 0.78 -2.3 427,858 - malI MCAODC_17815 0.79 +0.4 427,998 - -1.0 427,998 - +0.2 428,090 - +0.2 428,090 - -1.5 428,133 - +0.5 428,133 - +1.8 428,160 - -1.6 428,170 - +1.8 428,170 - +0.3 428,252 + -3.0 428,253 - +0.3 428,306 - -2.3 428,336 - -0.9 428,369 + +2.3 428,370 - +0.9 428,370 - +0.2 428,370 - +0.3 428,381 + +0.4 428,441 + malX MCAODC_17820 0.12 -0.6 428,888 - malX MCAODC_17820 0.40 -1.1 428,894 + malX MCAODC_17820 0.40 +0.0 429,180 + malX MCAODC_17820 0.58 +2.3 429,310 - malX MCAODC_17820 0.66 -2.2 429,444 + malX MCAODC_17820 0.75 +0.5 429,444 + malX MCAODC_17820 0.75 +0.7 429,444 + malX MCAODC_17820 0.75 +0.4 429,445 - malX MCAODC_17820 0.75 -0.8 429,486 + malX MCAODC_17820 0.77 +0.6 429,486 + malX MCAODC_17820 0.77 -0.2 429,600 + malX MCAODC_17820 0.85 +0.4 429,629 - malX MCAODC_17820 0.86 -0.0 429,659 + malX MCAODC_17820 0.88 -1.0 429,660 - malX MCAODC_17820 0.88 -0.2 429,668 + malX MCAODC_17820 0.89 -2.2 429,695 + -2.0 429,708 - -0.3 429,746 - +0.4 429,748 + +0.9 429,748 + +0.6 429,755 + -1.0 429,755 + -0.9 429,755 + -0.8 429,756 - -0.1 429,756 - +0.7 429,756 - +0.4 429,803 - +0.9 429,830 + +0.5 429,831 - +0.8 429,849 + -1.7 429,849 + +0.8 429,854 + -1.3 429,854 + +0.2 429,854 + +0.5 429,913 - -1.0 430,098 + malY MCAODC_17825 0.21 +0.9 430,098 + malY MCAODC_17825 0.21 +1.1 430,099 - malY MCAODC_17825 0.21 -2.2 430,129 - malY MCAODC_17825 0.23 -0.0 430,129 - malY MCAODC_17825 0.23 +1.7 430,143 - malY MCAODC_17825 0.25 +1.6 430,146 + malY MCAODC_17825 0.25 -2.6 430,146 + malY MCAODC_17825 0.25 -0.7 430,146 + malY MCAODC_17825 0.25 +0.5 430,146 + malY MCAODC_17825 0.25 +0.3 430,147 - malY MCAODC_17825 0.25 +1.2 430,147 - malY MCAODC_17825 0.25 -0.3 430,147 - malY MCAODC_17825 0.25 -0.8 430,147 - malY MCAODC_17825 0.25 +0.1 430,147 - malY MCAODC_17825 0.25 -0.7 430,147 - malY MCAODC_17825 0.25 +0.0 430,148 + malY MCAODC_17825 0.25 -0.8 430,148 + malY MCAODC_17825 0.25 +1.3 430,149 - malY MCAODC_17825 0.25 +0.4 430,149 - malY MCAODC_17825 0.25 +0.8 430,149 - malY MCAODC_17825 0.25 +0.4 430,228 - malY MCAODC_17825 0.32 +0.9 430,349 + malY MCAODC_17825 0.42 -0.2 430,472 + malY MCAODC_17825 0.53 +0.9 430,508 + malY MCAODC_17825 0.56 +0.8 430,562 + malY MCAODC_17825 0.60 -0.6 430,592 + malY MCAODC_17825 0.63 +0.7 430,667 - malY MCAODC_17825 0.69 -0.4 430,837 + malY MCAODC_17825 0.84 +1.9
Or see this region's nucleotide sequence