Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ynfL and ynfM are separated by 106 nucleotides ynfM and asr are separated by 423 nucleotides asr and ydgU are separated by 92 nucleotides
MCAODC_17675: ynfL - Uncharacterized HTH-type transcriptional regulator YnfL, at 397,769 to 398,662
ynfL
MCAODC_17680: ynfM - Inner membrane transport protein YnfM, at 398,769 to 400,022
ynfM
MCAODC_17685: asr - acid resistance repetitive basic protein Asr, at 400,446 to 400,754
asr
MCAODC_17690: ydgU - Uncharacterized protein YdgU, at 400,847 to 400,930
ydgU
Position (kb) 398
399
400
401 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 397.916 kb on - strand, within ynfL at 398.122 kb on + strand, within ynfL at 398.493 kb on - strand, within ynfL at 398.561 kb on + strand, within ynfL at 398.635 kb on - strand at 398.662 kb on + strand at 398.729 kb on + strand at 398.730 kb on - strand at 398.730 kb on - strand at 398.731 kb on + strand at 398.731 kb on + strand at 398.731 kb on + strand at 398.751 kb on - strand at 398.778 kb on - strand at 398.926 kb on - strand, within ynfM at 398.926 kb on - strand, within ynfM at 398.939 kb on + strand, within ynfM at 398.939 kb on + strand, within ynfM at 398.990 kb on + strand, within ynfM at 398.991 kb on - strand, within ynfM at 398.991 kb on - strand, within ynfM at 398.991 kb on - strand, within ynfM at 398.991 kb on - strand, within ynfM at 399.038 kb on + strand, within ynfM at 399.039 kb on - strand, within ynfM at 399.095 kb on - strand, within ynfM at 399.261 kb on + strand, within ynfM at 399.261 kb on + strand, within ynfM at 399.261 kb on + strand, within ynfM at 399.261 kb on + strand, within ynfM at 399.261 kb on + strand, within ynfM at 399.301 kb on + strand, within ynfM at 399.302 kb on - strand, within ynfM at 399.305 kb on + strand, within ynfM at 399.441 kb on - strand, within ynfM at 399.441 kb on - strand, within ynfM at 399.453 kb on - strand, within ynfM at 399.543 kb on - strand, within ynfM at 399.547 kb on - strand, within ynfM at 399.722 kb on - strand, within ynfM at 399.865 kb on - strand, within ynfM at 399.926 kb on + strand at 399.927 kb on - strand at 399.930 kb on + strand at 399.931 kb on - strand at 399.931 kb on - strand at 399.956 kb on + strand at 399.956 kb on + strand at 399.957 kb on - strand at 399.957 kb on - strand at 400.087 kb on - strand at 400.150 kb on - strand at 400.150 kb on - strand at 400.152 kb on - strand at 400.152 kb on - strand at 400.152 kb on - strand at 400.152 kb on - strand at 400.152 kb on - strand at 400.192 kb on + strand at 400.193 kb on - strand at 400.232 kb on - strand at 400.256 kb on - strand at 400.260 kb on - strand at 400.292 kb on + strand at 400.312 kb on - strand at 400.329 kb on + strand at 400.329 kb on + strand at 400.385 kb on + strand at 400.385 kb on + strand at 400.386 kb on - strand at 400.387 kb on + strand at 400.387 kb on + strand at 400.387 kb on + strand at 400.387 kb on + strand at 400.388 kb on - strand at 400.416 kb on + strand at 400.457 kb on - strand at 400.637 kb on + strand, within asr at 400.880 kb on - strand, within ydgU at 400.975 kb on - strand at 400.983 kb on + strand at 400.983 kb on + strand at 400.999 kb on + strand at 401.000 kb on - strand at 401.002 kb on + strand at 401.009 kb on - strand at 401.012 kb on + strand at 401.012 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 397,916 - ynfL MCAODC_17675 0.16 +1.7 398,122 + ynfL MCAODC_17675 0.39 -0.5 398,493 - ynfL MCAODC_17675 0.81 -1.2 398,561 + ynfL MCAODC_17675 0.89 +1.9 398,635 - -0.6 398,662 + +1.4 398,729 + +1.5 398,730 - +1.3 398,730 - +1.9 398,731 + +1.5 398,731 + +0.4 398,731 + -1.3 398,751 - +0.9 398,778 - +0.9 398,926 - ynfM MCAODC_17680 0.13 +0.5 398,926 - ynfM MCAODC_17680 0.13 -2.6 398,939 + ynfM MCAODC_17680 0.14 +0.0 398,939 + ynfM MCAODC_17680 0.14 -0.5 398,990 + ynfM MCAODC_17680 0.18 +1.7 398,991 - ynfM MCAODC_17680 0.18 +1.4 398,991 - ynfM MCAODC_17680 0.18 +0.7 398,991 - ynfM MCAODC_17680 0.18 -0.0 398,991 - ynfM MCAODC_17680 0.18 +0.5 399,038 + ynfM MCAODC_17680 0.21 -4.2 399,039 - ynfM MCAODC_17680 0.22 +1.2 399,095 - ynfM MCAODC_17680 0.26 +0.4 399,261 + ynfM MCAODC_17680 0.39 +0.5 399,261 + ynfM MCAODC_17680 0.39 +0.4 399,261 + ynfM MCAODC_17680 0.39 +0.1 399,261 + ynfM MCAODC_17680 0.39 -2.6 399,261 + ynfM MCAODC_17680 0.39 +2.5 399,301 + ynfM MCAODC_17680 0.42 -0.2 399,302 - ynfM MCAODC_17680 0.43 +1.7 399,305 + ynfM MCAODC_17680 0.43 -1.1 399,441 - ynfM MCAODC_17680 0.54 -0.1 399,441 - ynfM MCAODC_17680 0.54 +1.0 399,453 - ynfM MCAODC_17680 0.55 -0.2 399,543 - ynfM MCAODC_17680 0.62 -0.1 399,547 - ynfM MCAODC_17680 0.62 -0.1 399,722 - ynfM MCAODC_17680 0.76 +1.3 399,865 - ynfM MCAODC_17680 0.87 +1.3 399,926 + +0.8 399,927 - -0.3 399,930 + -0.4 399,931 - +0.7 399,931 - -0.9 399,956 + +0.2 399,956 + +1.0 399,957 - -0.1 399,957 - -1.9 400,087 - +1.4 400,150 - +0.2 400,150 - +0.4 400,152 - -0.2 400,152 - -0.5 400,152 - -0.8 400,152 - +0.7 400,152 - +1.1 400,192 + -2.4 400,193 - -1.8 400,232 - +0.4 400,256 - +0.5 400,260 - +0.6 400,292 + +0.8 400,312 - +1.4 400,329 + -0.1 400,329 + +1.6 400,385 + +1.1 400,385 + -2.6 400,386 - -0.1 400,387 + +1.0 400,387 + -1.0 400,387 + +0.4 400,387 + +0.4 400,388 - -0.2 400,416 + +0.9 400,457 - -1.0 400,637 + asr MCAODC_17685 0.62 +1.1 400,880 - ydgU MCAODC_17690 0.39 -0.5 400,975 - -4.0 400,983 + -2.6 400,983 + +0.2 400,999 + -0.2 401,000 - +0.3 401,002 + -2.0 401,009 - +0.6 401,012 + +1.7 401,012 + -0.4
Or see this region's nucleotide sequence