Strain Fitness in Escherichia coli ECRC101 around MCAODC_17575

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_17555 and dicB are separated by 400 nucleotidesdicB and MCAODC_17570 overlap by 4 nucleotidesMCAODC_17570 and MCAODC_17575 are separated by 92 nucleotidesMCAODC_17575 and tnp-IS3 are separated by 5 nucleotidestnp-IS3 and tnp-IS3 overlap by 1 nucleotides MCAODC_17555: MCAODC_17555 - hypothetical protein, at 378,287 to 378,451 _17555 MCAODC_17565: dicB - Division inhibition protein DicB, at 378,852 to 379,040 dicB MCAODC_17570: MCAODC_17570 - DUF1482 domain-containing protein, at 379,037 to 379,228 _17570 MCAODC_17575: MCAODC_17575 - exonuclease, at 379,321 to 380,451 _17575 MCAODC_17580: tnp-IS3 - IS3 family transposase, at 380,457 to 380,783 tnp-IS3 MCAODC_17585: tnp-IS3 - IS3 family transposase, at 380,783 to 381,670 tnp-IS3 Position (kb) 379 380 381Strain fitness (log2 ratio) -2 -1 0 1at 379.367 kb on + strandat 379.555 kb on + strand, within MCAODC_17575at 379.555 kb on + strand, within MCAODC_17575at 379.557 kb on + strand, within MCAODC_17575at 379.677 kb on + strand, within MCAODC_17575

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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379,367 + -1.5
379,555 + MCAODC_17575 0.21 -1.9
379,555 + MCAODC_17575 0.21 +0.4
379,557 + MCAODC_17575 0.21 -2.1
379,677 + MCAODC_17575 0.31 +0.3

Or see this region's nucleotide sequence