Strain Fitness in Escherichia coli ECRC101 around MCAODC_16975

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_16970 and MCAODC_16975 overlap by 4 nucleotidesMCAODC_16975 and MCAODC_16980 are separated by 341 nucleotidesMCAODC_16980 and rri1 overlap by 4 nucleotides MCAODC_16970: MCAODC_16970 - Phage-related protein, tail protein J, at 300,721 to 303,231 _16970 MCAODC_16975: MCAODC_16975 - host specificity protein J, at 303,228 to 304,796 _16975 MCAODC_16980: MCAODC_16980 - tail assembly protein, at 305,138 to 305,719 _16980 MCAODC_16985: rri1 - phage tail protein, at 305,716 to 306,459 rri1 Position (kb) 303 304 305Strain fitness (log2 ratio) -3 -2 -1 0 1at 305.025 kb on + strandat 305.139 kb on + strandat 305.139 kb on + strandat 305.139 kb on + strandat 305.633 kb on + strand, within MCAODC_16980

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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305,025 + +0.7
305,139 + -3.2
305,139 + -0.2
305,139 + -2.0
305,633 + MCAODC_16980 0.85 -0.5

Or see this region's nucleotide sequence