Strain Fitness in Escherichia coli ECRC101 around MCAODC_16210

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthrpA and MCAODC_16210 are separated by 145 nucleotidesMCAODC_16210 and MCAODC_16215 are separated by 4 nucleotidesMCAODC_16215 and MCAODC_16220 overlap by 14 nucleotidesMCAODC_16220 and MCAODC_16225 are separated by 124 nucleotides MCAODC_16205: hrpA - ATP-dependent RNA helicase HrpA, at 136,454 to 140,356 hrpA MCAODC_16210: MCAODC_16210 - hypothetical protein, at 140,502 to 140,927 _16210 MCAODC_16215: MCAODC_16215 - hypothetical protein, at 140,932 to 141,270 _16215 MCAODC_16220: MCAODC_16220 - hypothetical protein, at 141,257 to 141,688 _16220 MCAODC_16225: MCAODC_16225 - hypothetical protein, at 141,813 to 142,190 _16225 Position (kb) 140 141Strain fitness (log2 ratio) -3 -2 -1 0 1at 139.507 kb on + strand, within hrpAat 139.508 kb on - strand, within hrpAat 139.538 kb on + strand, within hrpAat 139.538 kb on + strand, within hrpAat 139.559 kb on + strand, within hrpAat 139.789 kb on + strand, within hrpAat 139.979 kb on - strandat 140.031 kb on + strandat 140.032 kb on - strandat 140.323 kb on + strandat 140.324 kb on - strandat 140.399 kb on - strandat 140.458 kb on - strandat 141.797 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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139,507 + hrpA MCAODC_16205 0.78 -0.7
139,508 - hrpA MCAODC_16205 0.78 +0.5
139,538 + hrpA MCAODC_16205 0.79 -0.8
139,538 + hrpA MCAODC_16205 0.79 -3.2
139,559 + hrpA MCAODC_16205 0.80 -0.5
139,789 + hrpA MCAODC_16205 0.85 -2.0
139,979 - -1.5
140,031 + -2.9
140,032 - -3.0
140,323 + +0.6
140,324 - +0.2
140,399 - -0.7
140,458 - -0.9
141,797 + +0.7

Or see this region's nucleotide sequence