Strain Fitness in Escherichia coli ECRC101 around MCAODC_14355

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
2,818,369	+	ccmC	MCAODC_14340	0.71	-0.1
2,818,512	+				-2.2
2,818,578	+				+0.2
2,818,578	+				-3.1
2,818,760	-	ccmD	MCAODC_14345	0.85	-1.8
2,818,760	-	ccmD	MCAODC_14345	0.85	-0.4
2,818,792	+				-1.0
2,818,793	-				-0.1
2,818,866	+	ccmE	MCAODC_14350	0.16	-0.5
2,818,867	-	ccmE	MCAODC_14350	0.17	+0.8
2,818,867	-	ccmE	MCAODC_14350	0.17	+0.4
2,818,867	-	ccmE	MCAODC_14350	0.17	-1.6
2,818,868	+	ccmE	MCAODC_14350	0.17	+0.5
2,818,868	+	ccmE	MCAODC_14350	0.17	+2.1
2,818,899	-	ccmE	MCAODC_14350	0.23	+0.1
2,818,900	+	ccmE	MCAODC_14350	0.24	+1.0
2,819,069	+	ccmE	MCAODC_14350	0.59	+0.8
2,819,070	-	ccmE	MCAODC_14350	0.59	-1.4
2,819,147	-	ccmE	MCAODC_14350	0.75	-2.1
2,819,147	-	ccmE	MCAODC_14350	0.75	+0.5
2,819,186	+	ccmE	MCAODC_14350	0.83	-1.9
2,819,246	+				+0.6
2,819,246	+				+0.6
2,819,247	-				-3.2
2,819,329	+				-0.4
2,819,403	+				+0.1
2,819,470	+	ccmF	MCAODC_14355	0.11	+0.4
2,819,470	+	ccmF	MCAODC_14355	0.11	+2.8
2,819,471	-	ccmF	MCAODC_14355	0.11	-0.4
2,819,471	-	ccmF	MCAODC_14355	0.11	+0.4
2,819,471	-	ccmF	MCAODC_14355	0.11	+0.5
2,819,471	-	ccmF	MCAODC_14355	0.11	-0.7
2,819,471	-	ccmF	MCAODC_14355	0.11	+0.5
2,819,509	+	ccmF	MCAODC_14355	0.13	+0.2
2,819,610	+	ccmF	MCAODC_14355	0.18	-0.8
2,819,611	-	ccmF	MCAODC_14355	0.18	-0.7
2,819,688	+	ccmF	MCAODC_14355	0.22	+0.8
2,819,694	+	ccmF	MCAODC_14355	0.22	-0.7
2,819,794	+	ccmF	MCAODC_14355	0.27	+0.1
2,819,794	+	ccmF	MCAODC_14355	0.27	+0.7
2,819,794	+	ccmF	MCAODC_14355	0.27	+1.8
2,819,794	+	ccmF	MCAODC_14355	0.27	+0.1
2,819,794	+	ccmF	MCAODC_14355	0.27	+1.2
2,819,795	-	ccmF	MCAODC_14355	0.27	+1.6
2,819,795	-	ccmF	MCAODC_14355	0.27	-1.3
2,819,795	-	ccmF	MCAODC_14355	0.27	-0.9
2,819,795	-	ccmF	MCAODC_14355	0.27	+0.5
2,819,796	+	ccmF	MCAODC_14355	0.27	-2.1
2,819,797	-	ccmF	MCAODC_14355	0.27	-0.5
2,819,803	+	ccmF	MCAODC_14355	0.28	+1.3
2,819,803	+	ccmF	MCAODC_14355	0.28	-1.0
2,819,803	+	ccmF	MCAODC_14355	0.28	+0.0
2,819,804	-	ccmF	MCAODC_14355	0.28	-2.2
2,819,872	+	ccmF	MCAODC_14355	0.31	+0.4
2,819,872	+	ccmF	MCAODC_14355	0.31	+0.7
2,819,872	+	ccmF	MCAODC_14355	0.31	-1.0
2,819,872	+	ccmF	MCAODC_14355	0.31	-0.3
2,819,872	+	ccmF	MCAODC_14355	0.31	+2.1
2,819,873	-	ccmF	MCAODC_14355	0.31	+0.6
2,819,956	+	ccmF	MCAODC_14355	0.36	+0.2
2,820,013	-	ccmF	MCAODC_14355	0.39	+0.6
2,820,092	+	ccmF	MCAODC_14355	0.43	-0.6
2,820,092	+	ccmF	MCAODC_14355	0.43	+0.4
2,820,093	-	ccmF	MCAODC_14355	0.43	+0.1
2,820,093	-	ccmF	MCAODC_14355	0.43	+1.5
2,820,217	-	ccmF	MCAODC_14355	0.49	-2.0
2,820,285	-	ccmF	MCAODC_14355	0.53	-1.0
2,820,285	-	ccmF	MCAODC_14355	0.53	+0.2
2,820,411	+	ccmF	MCAODC_14355	0.59	+0.2
2,820,448	-	ccmF	MCAODC_14355	0.61	-1.5
2,820,536	+	ccmF	MCAODC_14355	0.65	+0.8
2,820,559	-	ccmF	MCAODC_14355	0.67	-2.5
2,820,559	-	ccmF	MCAODC_14355	0.67	+1.0
2,820,677	+	ccmF	MCAODC_14355	0.73	+1.3
2,820,681	+	ccmF	MCAODC_14355	0.73	+1.8
2,820,682	-	ccmF	MCAODC_14355	0.73	-1.1
2,820,682	-	ccmF	MCAODC_14355	0.73	+0.1
2,820,712	+	ccmF	MCAODC_14355	0.75	-1.4
2,820,782	-	ccmF	MCAODC_14355	0.78	+0.2
2,820,782	-	ccmF	MCAODC_14355	0.78	-0.5
2,820,961	+	ccmF	MCAODC_14355	0.87	-1.6
2,820,961	+	ccmF	MCAODC_14355	0.87	-0.6
2,821,075	+				-1.0
2,821,078	+				+0.9
2,821,202	+				+0.3
2,821,202	+				-2.6
2,821,236	-				-1.2
2,821,381	-	dsbE	MCAODC_14360	0.32	+0.2
2,821,421	+	dsbE	MCAODC_14360	0.39	+0.6
2,821,467	+	dsbE	MCAODC_14360	0.47	-2.0
2,821,515	+	dsbE	MCAODC_14360	0.56	+0.5
2,821,515	+	dsbE	MCAODC_14360	0.56	+0.3
2,821,515	+	dsbE	MCAODC_14360	0.56	+0.4
2,821,515	+	dsbE	MCAODC_14360	0.56	-0.1
2,821,515	+	dsbE	MCAODC_14360	0.56	-0.3
2,821,515	+	dsbE	MCAODC_14360	0.56	-0.3
2,821,516	-	dsbE	MCAODC_14360	0.56	-0.1
2,821,603	+	dsbE	MCAODC_14360	0.72	-0.2
2,821,603	+	dsbE	MCAODC_14360	0.72	-0.4
2,821,646	+	dsbE	MCAODC_14360	0.79	-2.1
2,821,647	-	dsbE	MCAODC_14360	0.80	+0.1
2,821,737	+				-1.9
2,821,742	+				+1.3
2,821,832	-				+0.3
2,821,955	+	ccmH	MCAODC_14365	0.19	+0.2
2,821,956	-	ccmH	MCAODC_14365	0.19	+0.5
2,821,981	+	ccmH	MCAODC_14365	0.21	+1.7
2,822,001	-	ccmH	MCAODC_14365	0.23	-1.9
2,822,002	+	ccmH	MCAODC_14365	0.23	+0.7
2,822,002	+	ccmH	MCAODC_14365	0.23	+0.6
2,822,002	+	ccmH	MCAODC_14365	0.23	+0.6
2,822,002	+	ccmH	MCAODC_14365	0.23	+0.1
2,822,002	+	ccmH	MCAODC_14365	0.23	+0.6
2,822,002	+	ccmH	MCAODC_14365	0.23	-0.1
2,822,002	+	ccmH	MCAODC_14365	0.23	-1.7
2,822,003	-	ccmH	MCAODC_14365	0.23	+1.0
2,822,003	-	ccmH	MCAODC_14365	0.23	-0.6
2,822,003	-	ccmH	MCAODC_14365	0.23	+0.2
2,822,003	-	ccmH	MCAODC_14365	0.23	+3.4
2,822,003	-	ccmH	MCAODC_14365	0.23	-1.5
2,822,003	-	ccmH	MCAODC_14365	0.23	-1.9
2,822,003	-	ccmH	MCAODC_14365	0.23	+0.1
2,822,033	+	ccmH	MCAODC_14365	0.26	-1.3
2,822,033	+	ccmH	MCAODC_14365	0.26	-0.3
2,822,033	+	ccmH	MCAODC_14365	0.26	+0.1
2,822,112	+	ccmH	MCAODC_14365	0.34	+2.6
2,822,112	+	ccmH	MCAODC_14365	0.34	-4.2
2,822,114	+	ccmH	MCAODC_14365	0.34	+0.7
2,822,114	+	ccmH	MCAODC_14365	0.34	+1.0
2,822,114	+	ccmH	MCAODC_14365	0.34	-1.1
2,822,114	+	ccmH	MCAODC_14365	0.34	-1.4
2,822,114	+	ccmH	MCAODC_14365	0.34	-0.8
2,822,114	+	ccmH	MCAODC_14365	0.34	-0.2
2,822,115	-	ccmH	MCAODC_14365	0.34	+1.0
2,822,115	-	ccmH	MCAODC_14365	0.34	-0.7
2,822,205	-	ccmH	MCAODC_14365	0.43	+1.6