Strain Fitness in Escherichia coli ECRC101 around MCAODC_14140

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
2,770,513	-	lysR	MCAODC_14135	0.39	+0.0
2,770,586	+	lysR	MCAODC_14135	0.47	+0.4
2,770,587	-	lysR	MCAODC_14135	0.47	-2.6
2,770,730	-	lysR	MCAODC_14135	0.64	+0.8
2,770,821	+	lysR	MCAODC_14135	0.74	-0.2
2,770,884	+	lysR	MCAODC_14135	0.81	+2.1
2,770,910	-	lysR	MCAODC_14135	0.84	-0.6
2,770,910	-	lysR	MCAODC_14135	0.84	+1.3
2,771,006	+				+0.2
2,771,006	+				-0.5
2,771,006	+				+0.1
2,771,094	+				-0.2
2,771,109	+				-0.0
2,771,109	+				+0.3
2,771,110	-				-0.4
2,771,129	+				+1.0
2,771,129	+				-0.8
2,771,129	+				+1.1
2,771,129	+				+1.1
2,771,129	+				+0.7
2,771,200	+				-0.1
2,771,201	-				-0.2
2,771,215	-				+0.9
2,771,281	-				+0.5
2,771,284	-				-0.9
2,771,490	+	araJ	MCAODC_14140	0.24	-1.8
2,771,525	-	araJ	MCAODC_14140	0.27	-3.1
2,771,686	+	araJ	MCAODC_14140	0.41	-1.5
2,771,686	+	araJ	MCAODC_14140	0.41	+0.0
2,771,686	+	araJ	MCAODC_14140	0.41	-1.6
2,771,686	+	araJ	MCAODC_14140	0.41	+0.2
2,771,686	+	araJ	MCAODC_14140	0.41	-0.1
2,771,703	+	araJ	MCAODC_14140	0.42	+0.7
2,771,707	+	araJ	MCAODC_14140	0.42	+0.7
2,771,707	+	araJ	MCAODC_14140	0.42	-1.0
2,771,708	-	araJ	MCAODC_14140	0.43	-1.1
2,771,708	-	araJ	MCAODC_14140	0.43	+0.9
2,771,845	+	araJ	MCAODC_14140	0.54	+0.7
2,771,845	+	araJ	MCAODC_14140	0.54	-0.5
2,771,845	+	araJ	MCAODC_14140	0.54	-0.3
2,771,846	-	araJ	MCAODC_14140	0.54	-1.4
2,771,846	-	araJ	MCAODC_14140	0.54	+0.3
2,771,898	-	araJ	MCAODC_14140	0.59	-1.2
2,772,015	-	araJ	MCAODC_14140	0.68	-1.8
2,772,085	-	araJ	MCAODC_14140	0.74	+0.9
2,772,122	+	araJ	MCAODC_14140	0.77	+0.6
2,772,268	+	araJ	MCAODC_14140	0.90	+0.6
2,772,268	+	araJ	MCAODC_14140	0.90	-0.4
2,772,268	+	araJ	MCAODC_14140	0.90	+0.7
2,772,303	+				+0.5
2,772,304	-				-1.8
2,772,307	-				+0.6
2,772,313	-				+2.8
2,772,330	-				+0.4
2,772,330	-				+0.6
2,772,392	+				+2.4
2,772,424	-				+0.3
2,772,431	+				-0.7
2,772,431	+				-0.3
2,772,431	+				+2.7
2,772,431	+				+0.9
2,772,431	+				+0.6
2,772,431	+				-0.0
2,772,431	+				-1.6
2,772,433	+				-0.3
2,772,433	+				-1.6
2,772,471	+				+2.0
2,772,543	+	inaA	MCAODC_14145	0.11	+0.1
2,772,543	+	inaA	MCAODC_14145	0.11	-1.3
2,772,544	-	inaA	MCAODC_14145	0.11	+0.4
2,772,547	+	inaA	MCAODC_14145	0.12	+0.7
2,772,602	+	inaA	MCAODC_14145	0.20	+1.7
2,772,604	+	inaA	MCAODC_14145	0.20	+0.9
2,772,604	+	inaA	MCAODC_14145	0.20	+0.9
2,772,605	-	inaA	MCAODC_14145	0.20	-2.7
2,772,605	-	inaA	MCAODC_14145	0.20	-0.7
2,772,608	+	inaA	MCAODC_14145	0.21	-2.5
2,772,609	-	inaA	MCAODC_14145	0.21	+0.7
2,772,686	+	inaA	MCAODC_14145	0.33	-0.7
2,772,687	-	inaA	MCAODC_14145	0.33	-1.5
2,772,687	-	inaA	MCAODC_14145	0.33	+0.9
2,772,690	+	inaA	MCAODC_14145	0.33	-3.4
2,772,789	+	inaA	MCAODC_14145	0.49	-0.3
2,772,789	+	inaA	MCAODC_14145	0.49	+1.2
2,772,820	+	inaA	MCAODC_14145	0.53	-0.3
2,772,857	+	inaA	MCAODC_14145	0.59	-0.2
2,772,907	-	inaA	MCAODC_14145	0.67	-0.1
2,772,934	+	inaA	MCAODC_14145	0.71	+1.5
2,772,934	+	inaA	MCAODC_14145	0.71	-0.5
2,772,934	+	inaA	MCAODC_14145	0.71	-0.1
2,772,934	+	inaA	MCAODC_14145	0.71	+0.7
2,772,945	+	inaA	MCAODC_14145	0.73	+0.8
2,772,966	+	inaA	MCAODC_14145	0.76	-2.9
2,773,032	+	inaA	MCAODC_14145	0.86	-0.3
2,773,105	+				+0.6
2,773,111	+				+0.5
2,773,111	+				+0.6
2,773,112	-				+0.2
2,773,112	-				-0.5
2,773,142	-				-3.0
2,773,147	+				-0.5
2,773,169	+				-2.5
2,773,242	-	yfaE	MCAODC_14150	0.26	+0.5
2,773,328	-	yfaE	MCAODC_14150	0.60	+0.5