Strain Fitness in Escherichia coli ECRC101 around MCAODC_12840

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
2,543,173	+	nupC	MCAODC_12830	0.49	-0.6
2,543,196	-	nupC	MCAODC_12830	0.50	+0.5
2,543,215	-	nupC	MCAODC_12830	0.52	+0.2
2,543,238	+	nupC	MCAODC_12830	0.54	+0.6
2,543,238	+	nupC	MCAODC_12830	0.54	-2.3
2,543,238	+	nupC	MCAODC_12830	0.54	+2.3
2,543,238	+	nupC	MCAODC_12830	0.54	+0.4
2,543,238	+	nupC	MCAODC_12830	0.54	-0.1
2,543,239	-	nupC	MCAODC_12830	0.54	-2.8
2,543,239	-	nupC	MCAODC_12830	0.54	+0.5
2,543,239	-	nupC	MCAODC_12830	0.54	+1.6
2,543,239	-	nupC	MCAODC_12830	0.54	+0.4
2,543,239	-	nupC	MCAODC_12830	0.54	+0.3
2,543,239	-	nupC	MCAODC_12830	0.54	+1.1
2,543,239	-	nupC	MCAODC_12830	0.54	+0.9
2,543,239	-	nupC	MCAODC_12830	0.54	+1.5
2,543,239	-	nupC	MCAODC_12830	0.54	-0.8
2,543,239	-	nupC	MCAODC_12830	0.54	-1.4
2,543,258	-	nupC	MCAODC_12830	0.56	-1.1
2,543,258	-	nupC	MCAODC_12830	0.56	+1.0
2,543,258	-	nupC	MCAODC_12830	0.56	-0.5
2,543,292	+	nupC	MCAODC_12830	0.58	+0.9
2,543,292	+	nupC	MCAODC_12830	0.58	-1.0
2,543,292	+	nupC	MCAODC_12830	0.58	+0.7
2,543,292	+	nupC	MCAODC_12830	0.58	+0.5
2,543,292	+	nupC	MCAODC_12830	0.58	+0.7
2,543,293	-	nupC	MCAODC_12830	0.59	-0.4
2,543,293	-	nupC	MCAODC_12830	0.59	+1.3
2,543,293	-	nupC	MCAODC_12830	0.59	-0.0
2,543,293	-	nupC	MCAODC_12830	0.59	-0.8
2,543,293	-	nupC	MCAODC_12830	0.59	-0.9
2,543,293	-	nupC	MCAODC_12830	0.59	+0.0
2,543,293	-	nupC	MCAODC_12830	0.59	+1.0
2,543,296	+	nupC	MCAODC_12830	0.59	-1.2
2,543,296	+	nupC	MCAODC_12830	0.59	+0.9
2,543,296	+	nupC	MCAODC_12830	0.59	+0.9
2,543,296	+	nupC	MCAODC_12830	0.59	-1.5
2,543,297	-	nupC	MCAODC_12830	0.59	+1.2
2,543,297	-	nupC	MCAODC_12830	0.59	+1.3
2,543,323	+	nupC	MCAODC_12830	0.61	+0.4
2,543,323	+	nupC	MCAODC_12830	0.61	+0.9
2,543,329	+	nupC	MCAODC_12830	0.62	+0.4
2,543,329	+	nupC	MCAODC_12830	0.62	+1.5
2,543,330	-	nupC	MCAODC_12830	0.62	-0.2
2,543,332	-	nupC	MCAODC_12830	0.62	-0.2
2,543,338	+	nupC	MCAODC_12830	0.62	+1.3
2,543,491	+	nupC	MCAODC_12830	0.75	+1.3
2,543,492	-	nupC	MCAODC_12830	0.75	+0.1
2,543,492	-	nupC	MCAODC_12830	0.75	-2.1
2,543,492	-	nupC	MCAODC_12830	0.75	+0.1
2,543,552	-	nupC	MCAODC_12830	0.80	+0.1
2,543,567	-	nupC	MCAODC_12830	0.81	+0.3
2,543,692	+				+2.9
2,543,698	-				-0.1
2,543,730	-				-0.6
2,543,791	+				+2.2
2,543,805	-				+0.6
2,543,805	-				-3.1
2,543,805	-				-0.7
2,543,835	+				+0.0
2,543,835	+				-0.9
2,543,835	+				+1.1
2,543,836	-				+0.2
2,543,836	-				+0.6
2,543,836	-				+1.2
2,543,836	-				+1.2
2,543,836	-				-5.1
2,543,836	-				+0.4
2,543,839	+				+0.7
2,543,839	+				-1.5
2,543,839	+				-0.2
2,543,839	+				-1.8
2,543,839	+				-0.4
2,543,839	+				+0.4
2,543,840	-				+0.7
2,543,840	-				-1.5
2,543,874	+				-1.2
2,543,874	+				+0.3
2,543,874	+				-3.0
2,543,875	-				+1.4
2,543,875	-				-1.2
2,543,875	-				+0.9
2,543,875	-				+0.1
2,543,875	-				-0.1
2,543,876	+				-2.0
2,543,876	+				+1.6
2,543,876	+				-1.6
2,543,876	+				-0.3
2,543,876	+				-0.3
2,543,906	-				+0.5
2,543,929	+				-2.6
2,543,930	-				+0.1
2,543,930	-				+2.0
2,543,938	+				+1.0
2,543,958	+				+0.0
2,543,958	+				+0.3
2,543,959	-				+0.6
2,543,980	-				+0.8
2,543,985	+				+2.3
2,544,012	-				+0.2
2,544,017	+				-3.8
2,544,028	+				+0.5
2,544,029	-				-1.1
2,544,220	+				-2.5
2,544,220	+				-0.1
2,544,220	+				+0.0
2,544,221	-				+0.1
2,544,221	-				+0.1
2,544,222	+				+0.7
2,544,223	-				+0.2
2,544,249	+				+1.2
2,544,250	-				-0.7
2,544,281	+	mntH	MCAODC_12840	0.12	-1.1
2,544,281	+	mntH	MCAODC_12840	0.12	-1.4
2,544,281	+	mntH	MCAODC_12840	0.12	-0.1
2,544,282	-	mntH	MCAODC_12840	0.13	+0.1
2,544,282	-	mntH	MCAODC_12840	0.13	-1.3
2,544,282	-	mntH	MCAODC_12840	0.13	-1.5
2,544,344	+	mntH	MCAODC_12840	0.18	+0.4
2,544,345	-	mntH	MCAODC_12840	0.18	-1.9
2,544,391	+	mntH	MCAODC_12840	0.21	-2.3
2,544,392	-	mntH	MCAODC_12840	0.21	-2.4
2,544,415	+	mntH	MCAODC_12840	0.23	+0.7
2,544,415	+	mntH	MCAODC_12840	0.23	+0.2
2,544,415	+	mntH	MCAODC_12840	0.23	+1.3
2,544,415	+	mntH	MCAODC_12840	0.23	-0.1
2,544,486	+	mntH	MCAODC_12840	0.29	+1.1
2,544,554	+	mntH	MCAODC_12840	0.34	+0.1
2,544,554	+	mntH	MCAODC_12840	0.34	-0.2
2,544,629	-	mntH	MCAODC_12840	0.41	+0.9
2,544,629	-	mntH	MCAODC_12840	0.41	+0.5
2,544,629	-	mntH	MCAODC_12840	0.41	+1.8
2,544,658	-	mntH	MCAODC_12840	0.43	-0.2
2,544,676	-	mntH	MCAODC_12840	0.44	+0.6
2,544,766	+	mntH	MCAODC_12840	0.52	-0.1
2,544,766	+	mntH	MCAODC_12840	0.52	-1.5
2,544,794	+	mntH	MCAODC_12840	0.54	+0.0
2,544,795	-	mntH	MCAODC_12840	0.54	+1.3
2,544,821	-	mntH	MCAODC_12840	0.56	+1.2
2,544,858	+	mntH	MCAODC_12840	0.59	-0.6
2,544,891	+	mntH	MCAODC_12840	0.62	+1.1
2,544,891	+	mntH	MCAODC_12840	0.62	-0.2
2,544,952	+	mntH	MCAODC_12840	0.67	-0.7
2,544,952	+	mntH	MCAODC_12840	0.67	+1.1
2,544,952	+	mntH	MCAODC_12840	0.67	+0.9
2,544,975	-	mntH	MCAODC_12840	0.68	+0.7
2,545,110	+	mntH	MCAODC_12840	0.79	-2.4
2,545,110	+	mntH	MCAODC_12840	0.79	-0.3
2,545,134	+	mntH	MCAODC_12840	0.81	-0.4
2,545,134	+	mntH	MCAODC_12840	0.81	-0.3
2,545,135	-	mntH	MCAODC_12840	0.81	+1.3
2,545,135	-	mntH	MCAODC_12840	0.81	+0.2
2,545,135	-	mntH	MCAODC_12840	0.81	+0.0
2,545,154	+	mntH	MCAODC_12840	0.83	-0.1
2,545,154	+	mntH	MCAODC_12840	0.83	+0.0
2,545,154	+	mntH	MCAODC_12840	0.83	-0.5
2,545,154	+	mntH	MCAODC_12840	0.83	+0.3
2,545,155	-	mntH	MCAODC_12840	0.83	-1.6
2,545,155	-	mntH	MCAODC_12840	0.83	+0.7
2,545,155	-	mntH	MCAODC_12840	0.83	-1.1
2,545,176	+	mntH	MCAODC_12840	0.85	+0.5
2,545,283	+				+0.2
2,545,307	+				-0.0
2,545,308	-				+0.7
2,545,308	-				+0.2
2,545,363	+				+1.2
2,545,363	+				-3.5
2,545,363	+				+0.5
2,545,363	+				-0.3
2,545,363	+				+0.8
2,545,364	-				-1.1
2,545,390	+				+0.4
2,545,446	+				-0.6
2,545,447	-				-0.1
2,545,455	+				-3.0
2,545,456	-				+0.3
2,545,506	+				-0.4
2,545,584	+	ypeC	MCAODC_12845	0.24	+0.0
2,545,584	+	ypeC	MCAODC_12845	0.24	-2.0
2,545,615	-	ypeC	MCAODC_12845	0.34	+1.6
2,545,621	+	ypeC	MCAODC_12845	0.35	+0.8
2,545,656	+	ypeC	MCAODC_12845	0.46	-3.3
2,545,656	+	ypeC	MCAODC_12845	0.46	-0.3
2,545,657	-	ypeC	MCAODC_12845	0.46	+0.1
2,545,708	+	ypeC	MCAODC_12845	0.62	+1.2
2,545,709	-	ypeC	MCAODC_12845	0.62	+0.1
2,545,754	+	ypeC	MCAODC_12845	0.76	-0.3
2,545,755	-	ypeC	MCAODC_12845	0.76	-0.5
2,545,755	-	ypeC	MCAODC_12845	0.76	+0.1
2,545,755	-	ypeC	MCAODC_12845	0.76	+0.0
2,545,835	+				+1.3
2,545,835	+				+0.3
2,545,835	+				+0.2
2,545,836	-				+1.9
2,545,880	-				+0.1
2,545,880	-				-0.6
2,545,893	-				+0.5
2,545,893	-				-1.0
2,545,921	-				-1.0
2,545,948	-				-2.2
2,546,009	+				+0.9
2,546,010	-				+0.5
2,546,013	-				-1.7
2,546,038	+				-1.4
2,546,039	-				+0.7
2,546,069	+				+0.3
2,546,097	-	yfeO	MCAODC_12850	0.12	-0.6
2,546,138	-	yfeO	MCAODC_12850	0.15	-0.4
2,546,153	+	yfeO	MCAODC_12850	0.16	+0.5
2,546,281	+	yfeO	MCAODC_12850	0.27	-0.4
2,546,282	-	yfeO	MCAODC_12850	0.27	-0.3
2,546,282	-	yfeO	MCAODC_12850	0.27	-1.8
2,546,359	+	yfeO	MCAODC_12850	0.33	+0.0