Strain Fitness in Escherichia coli ECRC101 around MCAODC_12385

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
2,456,023	+	hyfR	MCAODC_12380	0.55	-3.2
2,456,023	+	hyfR	MCAODC_12380	0.55	+0.4
2,456,024	-	hyfR	MCAODC_12380	0.55	-0.0
2,456,024	-	hyfR	MCAODC_12380	0.55	-0.7
2,456,026	+	hyfR	MCAODC_12380	0.55	-0.7
2,456,026	+	hyfR	MCAODC_12380	0.55	+0.6
2,456,026	+	hyfR	MCAODC_12380	0.55	-1.8
2,456,047	-	hyfR	MCAODC_12380	0.56	-1.0
2,456,047	-	hyfR	MCAODC_12380	0.56	-0.9
2,456,059	-	hyfR	MCAODC_12380	0.57	+1.4
2,456,059	-	hyfR	MCAODC_12380	0.57	-0.6
2,456,059	-	hyfR	MCAODC_12380	0.57	+0.1
2,456,064	+	hyfR	MCAODC_12380	0.57	-0.2
2,456,065	-	hyfR	MCAODC_12380	0.57	+0.2
2,456,091	+	hyfR	MCAODC_12380	0.59	+0.1
2,456,091	+	hyfR	MCAODC_12380	0.59	+0.6
2,456,091	+	hyfR	MCAODC_12380	0.59	+1.3
2,456,091	+	hyfR	MCAODC_12380	0.59	-0.1
2,456,091	+	hyfR	MCAODC_12380	0.59	+0.4
2,456,092	-	hyfR	MCAODC_12380	0.59	+0.5
2,456,092	-	hyfR	MCAODC_12380	0.59	+1.0
2,456,092	-	hyfR	MCAODC_12380	0.59	-0.1
2,456,092	-	hyfR	MCAODC_12380	0.59	-2.6
2,456,149	+	hyfR	MCAODC_12380	0.62	-0.5
2,456,149	+	hyfR	MCAODC_12380	0.62	+0.4
2,456,150	-	hyfR	MCAODC_12380	0.62	+1.2
2,456,150	-	hyfR	MCAODC_12380	0.62	-0.1
2,456,150	-	hyfR	MCAODC_12380	0.62	+1.0
2,456,150	-	hyfR	MCAODC_12380	0.62	+1.6
2,456,150	-	hyfR	MCAODC_12380	0.62	+0.5
2,456,155	+	hyfR	MCAODC_12380	0.62	+1.0
2,456,155	+	hyfR	MCAODC_12380	0.62	+1.2
2,456,156	-	hyfR	MCAODC_12380	0.62	-1.8
2,456,242	+	hyfR	MCAODC_12380	0.66	-0.1
2,456,243	-	hyfR	MCAODC_12380	0.66	-1.6
2,456,243	-	hyfR	MCAODC_12380	0.66	+0.6
2,456,259	+	hyfR	MCAODC_12380	0.67	+0.8
2,456,259	+	hyfR	MCAODC_12380	0.67	-2.5
2,456,260	-	hyfR	MCAODC_12380	0.67	-1.8
2,456,349	+	hyfR	MCAODC_12380	0.71	+0.8
2,456,349	+	hyfR	MCAODC_12380	0.71	+1.9
2,456,562	+	hyfR	MCAODC_12380	0.82	+0.6
2,456,563	-	hyfR	MCAODC_12380	0.82	+0.8
2,456,586	+	hyfR	MCAODC_12380	0.83	+1.9
2,456,617	+	hyfR	MCAODC_12380	0.85	-1.3
2,456,685	-	hyfR	MCAODC_12380	0.88	+0.0
2,456,733	-				+0.3
2,456,733	-				-2.7
2,456,764	-				-2.3
2,456,764	-				-0.3
2,456,809	+				+1.8
2,456,879	-				+1.1
2,456,916	+				+0.7
2,456,917	-				-0.7
2,456,917	-				-0.3
2,456,936	+				-1.7
2,456,937	-				+0.7
2,456,977	+				+1.3
2,456,978	-				-0.4
2,456,978	-				+0.4
2,457,110	+	hyfJ	MCAODC_12385	0.38	+0.9
2,457,111	-	hyfJ	MCAODC_12385	0.38	-1.0
2,457,146	+	hyfJ	MCAODC_12385	0.47	+1.3
2,457,147	-	hyfJ	MCAODC_12385	0.47	-0.0
2,457,265	+	hyfJ	MCAODC_12385	0.76	-0.7
2,457,266	-	hyfJ	MCAODC_12385	0.76	+0.7
2,457,266	-	hyfJ	MCAODC_12385	0.76	+1.1
2,457,268	+	hyfJ	MCAODC_12385	0.76	-1.8
2,457,268	+	hyfJ	MCAODC_12385	0.76	+1.0
2,457,268	+	hyfJ	MCAODC_12385	0.76	+1.0
2,457,268	+	hyfJ	MCAODC_12385	0.76	+0.2
2,457,268	+	hyfJ	MCAODC_12385	0.76	-2.5
2,457,269	-	hyfJ	MCAODC_12385	0.77	-0.5
2,457,269	-	hyfJ	MCAODC_12385	0.77	-0.6
2,457,269	-	hyfJ	MCAODC_12385	0.77	+0.5
2,457,269	-	hyfJ	MCAODC_12385	0.77	-0.2
2,457,269	-	hyfJ	MCAODC_12385	0.77	-0.1
2,457,269	-	hyfJ	MCAODC_12385	0.77	-1.8
2,457,269	-	hyfJ	MCAODC_12385	0.77	+0.5
2,457,274	-	hyfJ	MCAODC_12385	0.78	+2.0
2,457,368	-				-0.7
2,457,368	-				+0.5
2,457,368	-				+0.6
2,457,368	-				+0.1
2,457,402	+				+1.6
2,457,402	+				+0.3
2,457,403	-				+0.8
2,457,405	+				+0.8
2,457,406	-				+0.1
2,457,473	-	hyfI	MCAODC_12390	0.15	-1.3
2,457,552	+	hyfI	MCAODC_12390	0.26	+0.1
2,457,591	+	hyfI	MCAODC_12390	0.31	+1.2
2,457,591	+	hyfI	MCAODC_12390	0.31	-2.0
2,457,592	-	hyfI	MCAODC_12390	0.31	+1.3
2,457,592	-	hyfI	MCAODC_12390	0.31	-1.3
2,457,811	-	hyfI	MCAODC_12390	0.60	+0.1
2,457,830	+	hyfI	MCAODC_12390	0.62	+1.2
2,457,830	+	hyfI	MCAODC_12390	0.62	-0.9
2,457,849	+	hyfI	MCAODC_12390	0.65	-0.4
2,457,849	+	hyfI	MCAODC_12390	0.65	+0.3
2,457,876	+	hyfI	MCAODC_12390	0.68	+0.9
2,457,876	+	hyfI	MCAODC_12390	0.68	+0.0
2,457,876	+	hyfI	MCAODC_12390	0.68	-3.1
2,457,877	-	hyfI	MCAODC_12390	0.68	-2.0
2,457,877	-	hyfI	MCAODC_12390	0.68	+1.3
2,457,918	+	hyfI	MCAODC_12390	0.74	+1.4
2,458,014	-	hyfI	MCAODC_12390	0.86	-2.1
2,458,101	+				-0.1
2,458,101	+				-2.3
2,458,117	-				-0.9
2,458,141	-				+0.3
2,458,141	-				+1.2
2,458,141	-				-3.6
2,458,317	+	hyfH	MCAODC_12395	0.37	+0.7
2,458,339	+	hyfH	MCAODC_12395	0.41	+0.1
2,458,340	-	hyfH	MCAODC_12395	0.42	+0.6
2,458,340	-	hyfH	MCAODC_12395	0.42	-0.4
2,458,352	+	hyfH	MCAODC_12395	0.44	+0.5