Strain Fitness in Escherichia coli ECRC101 around MCAODC_11045

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
2,199,768	+	edcC	MCAODC_11035	0.58	+0.2
2,199,769	-	edcC	MCAODC_11035	0.58	+0.2
2,199,782	+	edcC	MCAODC_11035	0.59	-2.1
2,199,783	-	edcC	MCAODC_11035	0.59	+0.4
2,199,807	-	edcC	MCAODC_11035	0.61	+1.6
2,199,817	-	edcC	MCAODC_11035	0.62	+0.4
2,199,846	+	edcC	MCAODC_11035	0.64	-0.3
2,199,910	-	edcC	MCAODC_11035	0.68	+0.2
2,199,960	+	edcC	MCAODC_11035	0.72	+1.6
2,199,960	+	edcC	MCAODC_11035	0.72	-0.4
2,199,960	+	edcC	MCAODC_11035	0.72	-2.0
2,199,961	-	edcC	MCAODC_11035	0.72	+0.6
2,199,961	-	edcC	MCAODC_11035	0.72	-0.1
2,199,961	-	edcC	MCAODC_11035	0.72	+0.5
2,199,961	-	edcC	MCAODC_11035	0.72	+0.7
2,199,984	-	edcC	MCAODC_11035	0.74	+1.0
2,200,063	-	edcC	MCAODC_11035	0.79	+0.2
2,200,066	+	edcC	MCAODC_11035	0.79	+0.5
2,200,067	-	edcC	MCAODC_11035	0.79	-1.9
2,200,067	-	edcC	MCAODC_11035	0.79	+0.1
2,200,067	-	edcC	MCAODC_11035	0.79	-0.1
2,200,178	+	edcC	MCAODC_11035	0.87	+0.9
2,200,282	-				+0.7
2,200,355	+				+0.6
2,200,355	+				+0.7
2,200,356	-				+1.5
2,200,356	-				+1.4
2,200,359	+				+0.0
2,200,445	+	ecdD	MCAODC_11040	0.31	-0.6
2,200,445	+	ecdD	MCAODC_11040	0.31	-0.1
2,200,445	+	ecdD	MCAODC_11040	0.31	+0.4
2,200,446	-	ecdD	MCAODC_11040	0.31	-1.9
2,200,446	-	ecdD	MCAODC_11040	0.31	+1.4
2,200,447	+	ecdD	MCAODC_11040	0.32	+0.7
2,200,447	+	ecdD	MCAODC_11040	0.32	+0.6
2,200,448	-	ecdD	MCAODC_11040	0.32	+0.2
2,200,468	+	ecdD	MCAODC_11040	0.41	-0.4
2,200,468	+	ecdD	MCAODC_11040	0.41	+0.4
2,200,468	+	ecdD	MCAODC_11040	0.41	+0.8
2,200,468	+	ecdD	MCAODC_11040	0.41	+0.2
2,200,468	+	ecdD	MCAODC_11040	0.41	+1.5
2,200,470	+	ecdD	MCAODC_11040	0.41	+1.0
2,200,470	+	ecdD	MCAODC_11040	0.41	-0.7
2,200,471	-	ecdD	MCAODC_11040	0.42	-0.2
2,200,548	+	ecdD	MCAODC_11040	0.74	+0.4
2,200,600	-				-1.0
2,200,745	-	pphB	MCAODC_11045	0.15	+1.6
2,201,029	+	pphB	MCAODC_11045	0.58	+1.0
2,201,029	+	pphB	MCAODC_11045	0.58	-0.0
2,201,029	+	pphB	MCAODC_11045	0.58	-1.1
2,201,030	-	pphB	MCAODC_11045	0.58	-0.7
2,201,030	-	pphB	MCAODC_11045	0.58	-1.1
2,201,093	-	pphB	MCAODC_11045	0.68	+0.4
2,201,167	+	pphB	MCAODC_11045	0.79	+1.1
2,201,168	-	pphB	MCAODC_11045	0.79	+1.5
2,201,171	+	pphB	MCAODC_11045	0.79	+0.7
2,201,558	-				-3.5
2,201,614	+				-0.5
2,201,617	+				-0.6
2,201,693	-	mutS	MCAODC_11050	0.11	-0.1
2,201,693	-	mutS	MCAODC_11050	0.11	+0.7
2,201,693	-	mutS	MCAODC_11050	0.11	+1.4
2,201,693	-	mutS	MCAODC_11050	0.11	+0.2
2,201,698	+	mutS	MCAODC_11050	0.11	+0.7
2,201,699	-	mutS	MCAODC_11050	0.11	-1.3
2,201,699	-	mutS	MCAODC_11050	0.11	+0.1
2,201,699	-	mutS	MCAODC_11050	0.11	-0.1
2,201,815	+	mutS	MCAODC_11050	0.16	-0.1
2,201,868	+	mutS	MCAODC_11050	0.18	+0.9
2,201,868	+	mutS	MCAODC_11050	0.18	-0.2
2,201,868	+	mutS	MCAODC_11050	0.18	+0.0
2,201,868	+	mutS	MCAODC_11050	0.18	+0.5
2,201,869	-	mutS	MCAODC_11050	0.18	+0.2
2,201,869	-	mutS	MCAODC_11050	0.18	+0.0
2,201,914	-	mutS	MCAODC_11050	0.20	+0.5
2,201,914	-	mutS	MCAODC_11050	0.20	-1.7
2,201,926	+	mutS	MCAODC_11050	0.20	-0.0
2,201,935	+	mutS	MCAODC_11050	0.20	-0.4
2,201,963	-	mutS	MCAODC_11050	0.22	-0.0
2,202,017	-	mutS	MCAODC_11050	0.24	+0.3
2,202,054	-	mutS	MCAODC_11050	0.25	-0.0
2,202,054	-	mutS	MCAODC_11050	0.25	-0.3
2,202,057	+	mutS	MCAODC_11050	0.25	+1.5
2,202,057	+	mutS	MCAODC_11050	0.25	-1.3
2,202,057	+	mutS	MCAODC_11050	0.25	+0.3
2,202,058	-	mutS	MCAODC_11050	0.25	-0.1
2,202,058	-	mutS	MCAODC_11050	0.25	+1.5
2,202,058	-	mutS	MCAODC_11050	0.25	+0.9
2,202,058	-	mutS	MCAODC_11050	0.25	-0.7
2,202,068	-	mutS	MCAODC_11050	0.26	-0.2
2,202,069	+	mutS	MCAODC_11050	0.26	+0.3
2,202,070	-	mutS	MCAODC_11050	0.26	+0.2
2,202,070	-	mutS	MCAODC_11050	0.26	-1.2
2,202,103	+	mutS	MCAODC_11050	0.27	-0.0
2,202,103	+	mutS	MCAODC_11050	0.27	-0.2
2,202,104	-	mutS	MCAODC_11050	0.27	-0.9
2,202,104	-	mutS	MCAODC_11050	0.27	-2.1
2,202,105	+	mutS	MCAODC_11050	0.27	-0.2
2,202,105	+	mutS	MCAODC_11050	0.27	+0.5
2,202,105	+	mutS	MCAODC_11050	0.27	+1.5
2,202,105	+	mutS	MCAODC_11050	0.27	+0.4
2,202,105	+	mutS	MCAODC_11050	0.27	-4.0
2,202,106	-	mutS	MCAODC_11050	0.27	-1.1
2,202,106	-	mutS	MCAODC_11050	0.27	-0.3
2,202,106	-	mutS	MCAODC_11050	0.27	-0.0
2,202,106	-	mutS	MCAODC_11050	0.27	+1.7
2,202,106	-	mutS	MCAODC_11050	0.27	+0.9
2,202,106	-	mutS	MCAODC_11050	0.27	-0.6
2,202,106	-	mutS	MCAODC_11050	0.27	-0.1
2,202,106	-	mutS	MCAODC_11050	0.27	+1.2
2,202,106	-	mutS	MCAODC_11050	0.27	+1.1
2,202,106	-	mutS	MCAODC_11050	0.27	+0.7
2,202,106	-	mutS	MCAODC_11050	0.27	+0.8
2,202,109	+	mutS	MCAODC_11050	0.27	-0.5
2,202,110	-	mutS	MCAODC_11050	0.27	+0.1
2,202,110	-	mutS	MCAODC_11050	0.27	+0.0
2,202,139	+	mutS	MCAODC_11050	0.28	+0.9
2,202,139	+	mutS	MCAODC_11050	0.28	+1.3
2,202,139	+	mutS	MCAODC_11050	0.28	-0.6
2,202,139	+	mutS	MCAODC_11050	0.28	-1.3
2,202,251	-	mutS	MCAODC_11050	0.33	+1.1
2,202,273	+	mutS	MCAODC_11050	0.34	+1.9
2,202,273	+	mutS	MCAODC_11050	0.34	+0.4
2,202,273	+	mutS	MCAODC_11050	0.34	-0.4
2,202,273	+	mutS	MCAODC_11050	0.34	-0.3
2,202,274	-	mutS	MCAODC_11050	0.34	-1.5
2,202,285	+	mutS	MCAODC_11050	0.34	-0.5
2,202,286	-	mutS	MCAODC_11050	0.34	-0.3
2,202,286	-	mutS	MCAODC_11050	0.34	+0.8
2,202,286	-	mutS	MCAODC_11050	0.34	+2.2