Strain Fitness in Escherichia coli ECRC101 around MCAODC_10960

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
2,185,670	+	cas1e	MCAODC_10950	0.67	+0.3
2,185,676	+	cas1e	MCAODC_10950	0.67	+0.1
2,185,676	+	cas1e	MCAODC_10950	0.67	+0.8
2,185,701	+	cas1e	MCAODC_10950	0.70	-1.9
2,185,708	+	cas1e	MCAODC_10950	0.71	+0.1
2,185,708	+	cas1e	MCAODC_10950	0.71	+0.1
2,185,709	-	cas1e	MCAODC_10950	0.71	-0.2
2,185,722	-	cas1e	MCAODC_10950	0.72	-0.0
2,185,756	+	cas1e	MCAODC_10950	0.76	+0.9
2,185,757	-	cas1e	MCAODC_10950	0.76	+0.3
2,185,785	-	cas1e	MCAODC_10950	0.79	-0.5
2,185,798	+	cas1e	MCAODC_10950	0.81	+0.5
2,185,826	+	cas1e	MCAODC_10950	0.84	-0.9
2,185,827	-	cas1e	MCAODC_10950	0.84	+0.3
2,185,827	-	cas1e	MCAODC_10950	0.84	+0.4
2,185,827	-	cas1e	MCAODC_10950	0.84	+0.6
2,185,832	-	cas1e	MCAODC_10950	0.84	-0.2
2,185,844	-	cas1e	MCAODC_10950	0.86	-0.5
2,185,852	+	cas1e	MCAODC_10950	0.86	+0.7
2,185,852	+	cas1e	MCAODC_10950	0.86	-0.8
2,185,853	-	cas1e	MCAODC_10950	0.87	-0.2
2,186,017	-	cas2e	MCAODC_10955	0.15	-0.4
2,186,063	+	cas2e	MCAODC_10955	0.31	+0.2
2,186,063	+	cas2e	MCAODC_10955	0.31	-0.1
2,186,063	+	cas2e	MCAODC_10955	0.31	-1.3
2,186,063	+	cas2e	MCAODC_10955	0.31	-1.2
2,186,064	-	cas2e	MCAODC_10955	0.31	-0.4
2,186,064	-	cas2e	MCAODC_10955	0.31	-1.2
2,186,064	-	cas2e	MCAODC_10955	0.31	+0.5
2,186,064	-	cas2e	MCAODC_10955	0.31	+0.2
2,186,074	+	cas2e	MCAODC_10955	0.34	+0.1
2,186,075	-	cas2e	MCAODC_10955	0.35	-1.0
2,186,075	-	cas2e	MCAODC_10955	0.35	+0.1
2,186,075	-	cas2e	MCAODC_10955	0.35	+0.3
2,186,086	+	cas2e	MCAODC_10955	0.38	+2.0
2,186,206	+	cas2e	MCAODC_10955	0.79	+0.4
2,186,206	+	cas2e	MCAODC_10955	0.79	+0.8
2,186,311	+				-0.7
2,186,311	+				+0.4
2,186,311	+				-0.5
2,186,311	+				+0.2
2,186,350	-				-0.0
2,186,354	-				+1.4
2,186,354	-				-0.8
2,186,354	-				-0.4
2,186,354	-				-2.8
2,186,354	-				+0.3
2,186,359	+				+0.9
2,186,385	+				-0.1
2,186,606	-				-0.4
2,186,725	+				+1.4
2,186,726	-				+1.8
2,186,745	+				-0.6
2,186,752	-				+0.6
2,186,752	-				-0.4
2,186,773	+	iap	MCAODC_10960	0.11	+0.5
2,186,774	-	iap	MCAODC_10960	0.11	+0.3
2,186,838	+	iap	MCAODC_10960	0.18	+0.4
2,186,839	-	iap	MCAODC_10960	0.18	+1.1
2,186,876	-	iap	MCAODC_10960	0.21	-0.5
2,186,900	-	iap	MCAODC_10960	0.24	+2.1
2,186,913	+	iap	MCAODC_10960	0.25	-0.4
2,186,913	+	iap	MCAODC_10960	0.25	-0.0
2,186,914	-	iap	MCAODC_10960	0.25	+0.6
2,186,914	-	iap	MCAODC_10960	0.25	+0.1
2,186,982	+	iap	MCAODC_10960	0.31	+0.4
2,186,982	+	iap	MCAODC_10960	0.31	+0.8
2,187,057	-	iap	MCAODC_10960	0.39	+1.7
2,187,076	+	iap	MCAODC_10960	0.40	-0.8
2,187,076	+	iap	MCAODC_10960	0.40	-0.4
2,187,077	-	iap	MCAODC_10960	0.41	+0.0
2,187,105	+	iap	MCAODC_10960	0.43	+2.6
2,187,195	+	iap	MCAODC_10960	0.52	-0.0
2,187,251	-	iap	MCAODC_10960	0.57	-0.4
2,187,280	+	iap	MCAODC_10960	0.60	-2.8
2,187,280	+	iap	MCAODC_10960	0.60	+1.6
2,187,281	-	iap	MCAODC_10960	0.60	-0.9
2,187,281	-	iap	MCAODC_10960	0.60	+0.1
2,187,332	+	iap	MCAODC_10960	0.65	+0.1
2,187,332	+	iap	MCAODC_10960	0.65	+1.0
2,187,332	+	iap	MCAODC_10960	0.65	-1.1
2,187,332	+	iap	MCAODC_10960	0.65	-0.2
2,187,333	-	iap	MCAODC_10960	0.65	-1.3
2,187,333	-	iap	MCAODC_10960	0.65	+0.5
2,187,333	-	iap	MCAODC_10960	0.65	-1.6
2,187,333	-	iap	MCAODC_10960	0.65	+0.8
2,187,333	-	iap	MCAODC_10960	0.65	-0.3
2,187,333	-	iap	MCAODC_10960	0.65	-0.8
2,187,333	-	iap	MCAODC_10960	0.65	+1.3
2,187,337	-	iap	MCAODC_10960	0.66	+0.2
2,187,337	-	iap	MCAODC_10960	0.66	+1.4
2,187,352	-	iap	MCAODC_10960	0.67	+1.0
2,187,352	-	iap	MCAODC_10960	0.67	+0.5
2,187,354	+	iap	MCAODC_10960	0.67	+0.1
2,187,354	+	iap	MCAODC_10960	0.67	-0.5
2,187,354	+	iap	MCAODC_10960	0.67	+0.2
2,187,354	+	iap	MCAODC_10960	0.67	-1.5
2,187,355	-	iap	MCAODC_10960	0.67	+0.3
2,187,355	-	iap	MCAODC_10960	0.67	+0.2
2,187,399	+	iap	MCAODC_10960	0.72	+0.7
2,187,399	+	iap	MCAODC_10960	0.72	-0.1
2,187,399	+	iap	MCAODC_10960	0.72	-0.4
2,187,400	-	iap	MCAODC_10960	0.72	+0.1
2,187,400	-	iap	MCAODC_10960	0.72	+1.9
2,187,400	-	iap	MCAODC_10960	0.72	+0.4
2,187,400	-	iap	MCAODC_10960	0.72	-0.4
2,187,445	-	iap	MCAODC_10960	0.76	-1.9
2,187,445	-	iap	MCAODC_10960	0.76	+1.1
2,187,447	-	iap	MCAODC_10960	0.76	-0.6
2,187,447	-	iap	MCAODC_10960	0.76	+0.6
2,187,451	-	iap	MCAODC_10960	0.77	-1.1
2,187,452	+	iap	MCAODC_10960	0.77	-2.0
2,187,468	+	iap	MCAODC_10960	0.78	+1.1
2,187,515	+	iap	MCAODC_10960	0.83	-2.7
2,187,515	+	iap	MCAODC_10960	0.83	-0.0
2,187,516	-	iap	MCAODC_10960	0.83	-0.0
2,187,576	+	iap	MCAODC_10960	0.89	+1.4
2,187,576	+	iap	MCAODC_10960	0.89	-0.4
2,187,576	+	iap	MCAODC_10960	0.89	+0.2
2,187,576	+	iap	MCAODC_10960	0.89	+0.2
2,187,577	-	iap	MCAODC_10960	0.89	-1.0
2,187,592	-				-0.0
2,187,639	+				+0.6
2,187,640	-				+0.1
2,187,640	-				+0.7
2,187,693	+				+1.2
2,187,694	-				+0.4
2,187,705	-				+1.2
2,187,705	-				+0.3
2,187,708	+				-0.6
2,187,709	-				+1.0
2,187,709	-				+0.0
2,187,709	-				-0.7
2,187,709	-				-1.3
2,187,733	+				+0.2
2,187,733	+				-1.0
2,187,736	+				+0.7
2,187,736	+				+1.4
2,187,737	-				+0.7
2,187,800	-				-0.1
2,187,800	-				-0.9
2,187,816	+				+1.9
2,187,817	-				+0.6
2,187,849	+				-1.6
2,187,866	-				+0.2
2,187,883	+				-1.1
2,187,884	-				+0.9
2,187,894	+				-0.5
2,187,894	+				+0.7
2,187,921	+				-0.8
2,187,921	+				+0.6
2,187,944	+				+1.5
2,187,955	+				-0.2
2,187,962	+				+1.2
2,187,963	-				-1.1
2,188,002	-				-1.4
2,188,045	-	cysD	MCAODC_10965	0.11	+0.8
2,188,045	-	cysD	MCAODC_10965	0.11	+0.3
2,188,161	+	cysD	MCAODC_10965	0.24	+0.5
2,188,161	+	cysD	MCAODC_10965	0.24	+0.2
2,188,161	+	cysD	MCAODC_10965	0.24	+0.5
2,188,161	+	cysD	MCAODC_10965	0.24	+0.1
2,188,161	+	cysD	MCAODC_10965	0.24	-2.3
2,188,192	-	cysD	MCAODC_10965	0.27	+0.8
2,188,245	-	cysD	MCAODC_10965	0.33	-2.8
2,188,281	-	cysD	MCAODC_10965	0.37	+0.8
2,188,283	+	cysD	MCAODC_10965	0.37	-0.2
2,188,283	+	cysD	MCAODC_10965	0.37	+0.1
2,188,283	+	cysD	MCAODC_10965	0.37	-4.0
2,188,283	+	cysD	MCAODC_10965	0.37	+0.2
2,188,284	-	cysD	MCAODC_10965	0.37	+0.8
2,188,284	-	cysD	MCAODC_10965	0.37	-1.3
2,188,284	-	cysD	MCAODC_10965	0.37	+0.6
2,188,316	+	cysD	MCAODC_10965	0.41	-0.1
2,188,316	+	cysD	MCAODC_10965	0.41	+1.2
2,188,317	-	cysD	MCAODC_10965	0.41	-1.6
2,188,317	-	cysD	MCAODC_10965	0.41	-1.4
2,188,385	+	cysD	MCAODC_10965	0.48	+1.2
2,188,385	+	cysD	MCAODC_10965	0.48	-0.8
2,188,385	+	cysD	MCAODC_10965	0.48	-1.9
2,188,385	+	cysD	MCAODC_10965	0.48	+0.8
2,188,386	-	cysD	MCAODC_10965	0.49	+0.2
2,188,386	-	cysD	MCAODC_10965	0.49	+0.5
2,188,386	-	cysD	MCAODC_10965	0.49	+0.6
2,188,389	+	cysD	MCAODC_10965	0.49	-0.4
2,188,389	+	cysD	MCAODC_10965	0.49	-1.1
2,188,455	+	cysD	MCAODC_10965	0.56	-0.1
2,188,455	+	cysD	MCAODC_10965	0.56	+0.1
2,188,455	+	cysD	MCAODC_10965	0.56	-0.4
2,188,455	+	cysD	MCAODC_10965	0.56	+0.3
2,188,456	-	cysD	MCAODC_10965	0.56	+0.3
2,188,456	-	cysD	MCAODC_10965	0.56	-0.0
2,188,457	+	cysD	MCAODC_10965	0.56	+0.6
2,188,469	+	cysD	MCAODC_10965	0.58	-0.6
2,188,470	-	cysD	MCAODC_10965	0.58	+0.9
2,188,470	-	cysD	MCAODC_10965	0.58	+0.7
2,188,533	+	cysD	MCAODC_10965	0.65	-1.4
2,188,533	+	cysD	MCAODC_10965	0.65	+0.9
2,188,534	-	cysD	MCAODC_10965	0.65	+0.0
2,188,570	-	cysD	MCAODC_10965	0.69	+0.1
2,188,570	-	cysD	MCAODC_10965	0.69	-0.3
2,188,607	+	cysD	MCAODC_10965	0.73	+1.7
2,188,607	+	cysD	MCAODC_10965	0.73	-1.5
2,188,607	+	cysD	MCAODC_10965	0.73	+0.6
2,188,607	+	cysD	MCAODC_10965	0.73	-2.3
2,188,686	-	cysD	MCAODC_10965	0.82	+1.3