Strain Fitness in Escherichia coli ECRC101 around MCAODC_09865

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
1,967,055	-	yggP	MCAODC_09860	0.25	+1.1
1,967,081	+	yggP	MCAODC_09860	0.27	+0.3
1,967,081	+	yggP	MCAODC_09860	0.27	-0.5
1,967,082	-	yggP	MCAODC_09860	0.28	-2.0
1,967,082	-	yggP	MCAODC_09860	0.28	+0.0
1,967,083	+	yggP	MCAODC_09860	0.28	+0.9
1,967,084	-	yggP	MCAODC_09860	0.28	+1.3
1,967,084	-	yggP	MCAODC_09860	0.28	+0.7
1,967,084	-	yggP	MCAODC_09860	0.28	-0.2
1,967,084	-	yggP	MCAODC_09860	0.28	+0.4
1,967,089	+	yggP	MCAODC_09860	0.28	+0.1
1,967,121	+	yggP	MCAODC_09860	0.31	+0.4
1,967,121	+	yggP	MCAODC_09860	0.31	+2.1
1,967,170	+	yggP	MCAODC_09860	0.34	+0.1
1,967,170	+	yggP	MCAODC_09860	0.34	-0.1
1,967,171	-	yggP	MCAODC_09860	0.35	+0.8
1,967,171	-	yggP	MCAODC_09860	0.35	-0.5
1,967,171	-	yggP	MCAODC_09860	0.35	+0.6
1,967,182	+	yggP	MCAODC_09860	0.35	+0.6
1,967,204	+	yggP	MCAODC_09860	0.37	-0.4
1,967,205	-	yggP	MCAODC_09860	0.37	+1.0
1,967,219	+	yggP	MCAODC_09860	0.38	-0.5
1,967,220	-	yggP	MCAODC_09860	0.38	+0.4
1,967,226	-	yggP	MCAODC_09860	0.39	+0.3
1,967,226	-	yggP	MCAODC_09860	0.39	+0.6
1,967,318	-	yggP	MCAODC_09860	0.46	+1.0
1,967,328	+	yggP	MCAODC_09860	0.47	+0.3
1,967,329	-	yggP	MCAODC_09860	0.47	-2.2
1,967,329	-	yggP	MCAODC_09860	0.47	-1.0
1,967,329	-	yggP	MCAODC_09860	0.47	+0.1
1,967,329	-	yggP	MCAODC_09860	0.47	-0.8
1,967,329	-	yggP	MCAODC_09860	0.47	+0.4
1,967,382	+	yggP	MCAODC_09860	0.51	-0.7
1,967,383	-	yggP	MCAODC_09860	0.51	+0.2
1,967,435	+	yggP	MCAODC_09860	0.55	-0.1
1,967,435	+	yggP	MCAODC_09860	0.55	+0.4
1,967,436	-	yggP	MCAODC_09860	0.55	+0.3
1,967,436	-	yggP	MCAODC_09860	0.55	-2.1
1,967,436	-	yggP	MCAODC_09860	0.55	-0.3
1,967,436	-	yggP	MCAODC_09860	0.55	-1.5
1,967,519	+	yggP	MCAODC_09860	0.62	+0.7
1,967,645	+	yggP	MCAODC_09860	0.72	+1.6
1,967,646	-	yggP	MCAODC_09860	0.72	+0.8
1,967,646	-	yggP	MCAODC_09860	0.72	-3.1
1,967,669	-	yggP	MCAODC_09860	0.73	-0.5
1,967,669	-	yggP	MCAODC_09860	0.73	+0.1
1,967,730	+	yggP	MCAODC_09860	0.78	+1.4
1,967,730	+	yggP	MCAODC_09860	0.78	-1.4
1,967,731	-	yggP	MCAODC_09860	0.78	+1.2
1,967,828	+	yggP	MCAODC_09860	0.86	+0.0
1,967,828	+	yggP	MCAODC_09860	0.86	+0.0
1,967,829	-	yggP	MCAODC_09860	0.86	-1.8
1,967,829	-	yggP	MCAODC_09860	0.86	-0.7
1,967,829	-	yggP	MCAODC_09860	0.86	+0.3
1,967,830	+	yggP	MCAODC_09860	0.86	+0.0
1,967,899	+				+0.8
1,968,027	-				+1.8
1,968,330	+	glpX	MCAODC_09865	0.34	-0.2
1,968,338	+	glpX	MCAODC_09865	0.35	-2.9
1,968,351	+	glpX	MCAODC_09865	0.36	+0.2
1,968,355	+	glpX	MCAODC_09865	0.36	-0.5
1,968,355	+	glpX	MCAODC_09865	0.36	-2.4
1,968,355	+	glpX	MCAODC_09865	0.36	+0.0
1,968,355	+	glpX	MCAODC_09865	0.36	+0.2
1,968,355	+	glpX	MCAODC_09865	0.36	+0.4
1,968,355	+	glpX	MCAODC_09865	0.36	+0.9
1,968,355	+	glpX	MCAODC_09865	0.36	-0.2
1,968,356	-	glpX	MCAODC_09865	0.36	+0.1
1,968,356	-	glpX	MCAODC_09865	0.36	+0.4
1,968,357	+	glpX	MCAODC_09865	0.37	+0.3
1,968,358	-	glpX	MCAODC_09865	0.37	-0.2
1,968,375	+	glpX	MCAODC_09865	0.38	-1.2
1,968,453	+	glpX	MCAODC_09865	0.46	-1.1
1,968,598	-	glpX	MCAODC_09865	0.61	-0.0
1,968,604	+	glpX	MCAODC_09865	0.62	+1.4
1,968,604	+	glpX	MCAODC_09865	0.62	+0.4
1,968,616	+	glpX	MCAODC_09865	0.63	-1.6
1,968,616	+	glpX	MCAODC_09865	0.63	+0.1
1,968,616	+	glpX	MCAODC_09865	0.63	-2.2
1,968,616	+	glpX	MCAODC_09865	0.63	-0.6
1,968,617	-	glpX	MCAODC_09865	0.63	-0.1
1,968,617	-	glpX	MCAODC_09865	0.63	-0.5
1,968,617	-	glpX	MCAODC_09865	0.63	-1.6
1,968,617	-	glpX	MCAODC_09865	0.63	-2.5
1,968,672	-	glpX	MCAODC_09865	0.69	-0.2
1,968,681	+	glpX	MCAODC_09865	0.70	+1.4
1,968,725	-	glpX	MCAODC_09865	0.75	+0.5
1,968,725	-	glpX	MCAODC_09865	0.75	-0.5
1,968,799	+	glpX	MCAODC_09865	0.82	+0.1
1,968,800	-	glpX	MCAODC_09865	0.82	+0.2
1,968,812	+	glpX	MCAODC_09865	0.84	+1.4
1,968,813	-	glpX	MCAODC_09865	0.84	+1.8
1,968,818	+	glpX	MCAODC_09865	0.84	+0.5
1,968,917	+				-1.7
1,968,918	-				-0.1
1,968,945	+				+2.1
1,968,946	-				+0.4
1,968,946	-				+1.3
1,968,948	+				-0.4
1,968,949	-				+0.7
1,968,949	-				+0.1
1,968,949	-				-0.3
1,968,949	-				-0.6
1,968,950	+				-0.3
1,968,950	+				-0.0
1,968,950	+				+0.4
1,968,950	+				+0.2
1,968,951	-				+1.1
1,968,951	-				+0.5
1,968,953	+				+0.8
1,968,953	+				+1.1
1,968,953	+				+0.2
1,968,954	-				+1.5
1,968,954	-				+0.0
1,968,954	-				-0.9
1,968,964	+				+0.2
1,968,978	+				-0.4
1,969,046	+	fumE	MCAODC_09870	0.11	-1.8
1,969,075	-	fumE	MCAODC_09870	0.16	+0.5
1,969,144	+	fumE	MCAODC_09870	0.30	+1.3
1,969,213	+	fumE	MCAODC_09870	0.44	-0.4
1,969,214	-	fumE	MCAODC_09870	0.44	+0.9
1,969,233	+	fumE	MCAODC_09870	0.47	-0.7
1,969,234	-	fumE	MCAODC_09870	0.48	+0.6
1,969,350	+	fumE	MCAODC_09870	0.70	-0.0
1,969,375	+	fumE	MCAODC_09870	0.75	+0.2
1,969,376	-	fumE	MCAODC_09870	0.75	-0.1
1,969,435	-	fumE	MCAODC_09870	0.87	-0.7
1,969,482	-				+0.7
1,969,490	+				+0.3
1,969,558	+				+1.0
1,969,559	-				-3.6
1,969,559	-				-0.1
1,969,559	-				-0.5
1,969,559	-				+1.4
1,969,586	+	coaA	MCAODC_09875	0.12	+0.4
1,969,600	+	coaA	MCAODC_09875	0.14	+0.4
1,969,601	-	coaA	MCAODC_09875	0.15	+0.7
1,969,601	-	coaA	MCAODC_09875	0.15	-0.4
1,969,601	-	coaA	MCAODC_09875	0.15	+0.8
1,969,667	+	coaA	MCAODC_09875	0.24	+0.2
1,969,689	+	coaA	MCAODC_09875	0.27	-0.2
1,969,689	+	coaA	MCAODC_09875	0.27	-1.1
1,969,690	-	coaA	MCAODC_09875	0.27	-1.0
1,969,690	-	coaA	MCAODC_09875	0.27	+1.0
1,969,690	-	coaA	MCAODC_09875	0.27	-0.5
1,969,755	+	coaA	MCAODC_09875	0.36	-1.3
1,969,755	+	coaA	MCAODC_09875	0.36	+1.4
1,969,755	+	coaA	MCAODC_09875	0.36	-1.4
1,969,755	+	coaA	MCAODC_09875	0.36	+0.3
1,969,756	-	coaA	MCAODC_09875	0.36	+0.2
1,969,760	+	coaA	MCAODC_09875	0.37	+0.3
1,969,761	-	coaA	MCAODC_09875	0.37	-0.2
1,969,865	+	coaA	MCAODC_09875	0.52	+0.0
1,969,866	-	coaA	MCAODC_09875	0.52	-0.1
1,969,866	-	coaA	MCAODC_09875	0.52	-0.1
1,969,866	-	coaA	MCAODC_09875	0.52	-0.3
1,969,922	+	coaA	MCAODC_09875	0.60	-0.9
1,969,958	-	coaA	MCAODC_09875	0.65	+0.6