Strain Fitness in Escherichia coli ECRC101 around MCAODC_09400

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
1,874,688	-	qseC	MCAODC_09390	0.88	+0.5
1,874,688	-	qseC	MCAODC_09390	0.88	-2.8
1,874,688	-	qseC	MCAODC_09390	0.88	+0.5
1,874,834	+				-0.6
1,874,864	+				+0.4
1,874,864	+				-0.2
1,874,864	+				+0.5
1,874,864	+				+1.3
1,874,864	+				-0.2
1,874,864	+				+1.4
1,874,865	-				+0.5
1,874,865	-				+1.5
1,874,865	-				+0.8
1,874,865	-				+0.8
1,874,865	-				-0.7
1,874,865	-				+1.4
1,874,865	-				-0.1
1,874,865	-				+0.1
1,874,872	-				-0.5
1,874,878	+				-0.2
1,874,879	-				-1.1
1,874,879	-				+1.8
1,874,879	-				+0.9
1,874,879	-				+0.9
1,874,891	-				+0.6
1,874,891	-				+1.0
1,874,951	-		MCAODC_09395	0.15	-0.6
1,874,974	+		MCAODC_09395	0.18	+0.3
1,874,976	+		MCAODC_09395	0.19	+0.2
1,874,976	+		MCAODC_09395	0.19	-0.3
1,874,977	-		MCAODC_09395	0.19	+1.1
1,874,977	-		MCAODC_09395	0.19	-0.2
1,874,977	-		MCAODC_09395	0.19	+1.3
1,874,977	-		MCAODC_09395	0.19	-0.2
1,874,977	-		MCAODC_09395	0.19	+0.4
1,875,032	+		MCAODC_09395	0.27	+1.6
1,875,032	+		MCAODC_09395	0.27	-0.5
1,875,032	+		MCAODC_09395	0.27	+0.8
1,875,033	-		MCAODC_09395	0.27	-0.2
1,875,194	+		MCAODC_09395	0.52	-2.1
1,875,195	-		MCAODC_09395	0.52	+0.1
1,875,211	+		MCAODC_09395	0.54	-0.0
1,875,212	-		MCAODC_09395	0.55	+0.3
1,875,248	+		MCAODC_09395	0.60	+0.2
1,875,248	+		MCAODC_09395	0.60	-0.2
1,875,329	-		MCAODC_09395	0.72	-0.6
1,875,329	-		MCAODC_09395	0.72	+0.5
1,875,356	+		MCAODC_09395	0.76	+0.9
1,875,357	-		MCAODC_09395	0.77	+0.1
1,875,357	-		MCAODC_09395	0.77	-0.5
1,875,378	+		MCAODC_09395	0.80	-0.3
1,875,378	+		MCAODC_09395	0.80	-2.7
1,875,378	+		MCAODC_09395	0.80	-0.4
1,875,378	+		MCAODC_09395	0.80	+2.0
1,875,379	-		MCAODC_09395	0.80	+0.9
1,875,379	-		MCAODC_09395	0.80	-0.4
1,875,379	-		MCAODC_09395	0.80	+0.5
1,875,388	+		MCAODC_09395	0.81	-0.0
1,875,390	+		MCAODC_09395	0.82	-0.3
1,875,391	-		MCAODC_09395	0.82	+1.1
1,875,391	-		MCAODC_09395	0.82	-1.6
1,875,391	-		MCAODC_09395	0.82	-0.5
1,875,448	+				+1.6
1,875,449	-				+1.6
1,875,449	-				+0.3
1,875,535	-				+0.5
1,875,544	+				+1.0
1,875,545	-				+0.3
1,875,548	-				+0.9
1,875,559	+				-0.2
1,875,559	+				-3.2
1,875,560	-				+0.1
1,875,572	-				+0.2
1,875,579	+				-0.1
1,875,600	-				+0.0
1,875,618	-				-0.1
1,875,625	+				+1.3
1,875,626	-				+0.8
1,875,626	-				+1.3
1,875,646	+				+0.1
1,875,658	+				-3.2
1,875,659	-				+0.7
1,875,659	-				-1.9
1,875,682	+				+0.2
1,875,683	-				-0.6
1,875,808	+	ygiW	MCAODC_09400	0.37	+0.6
1,875,809	-	ygiW	MCAODC_09400	0.37	+0.4
1,875,888	+	ygiW	MCAODC_09400	0.57	+0.4
1,875,888	+	ygiW	MCAODC_09400	0.57	-0.1
1,875,888	+	ygiW	MCAODC_09400	0.57	+0.1
1,875,888	+	ygiW	MCAODC_09400	0.57	+0.9
1,875,888	+	ygiW	MCAODC_09400	0.57	+0.3
1,875,888	+	ygiW	MCAODC_09400	0.57	-0.5
1,875,889	-	ygiW	MCAODC_09400	0.58	-0.1
1,875,914	+	ygiW	MCAODC_09400	0.64	+0.7
1,875,914	+	ygiW	MCAODC_09400	0.64	-1.8
1,875,914	+	ygiW	MCAODC_09400	0.64	-0.4
1,875,914	+	ygiW	MCAODC_09400	0.64	-0.3
1,875,914	+	ygiW	MCAODC_09400	0.64	-0.8
1,875,915	-	ygiW	MCAODC_09400	0.64	+0.5
1,875,915	-	ygiW	MCAODC_09400	0.64	+0.0
1,875,972	-	ygiW	MCAODC_09400	0.79	+0.2
1,876,054	-				-1.3
1,876,054	-				-0.0
1,876,088	+				-2.4
1,876,130	+				+1.2
1,876,130	+				+1.0
1,876,130	+				-0.4
1,876,131	-				-0.5
1,876,131	-				-0.2
1,876,131	-				-0.0
1,876,202	-	ygiV	MCAODC_09405	0.19	+1.3
1,876,326	+	ygiV	MCAODC_09405	0.45	-0.0
1,876,327	-	ygiV	MCAODC_09405	0.45	-0.0
1,876,366	+	ygiV	MCAODC_09405	0.53	-2.0
1,876,366	+	ygiV	MCAODC_09405	0.53	+2.1
1,876,451	+	ygiV	MCAODC_09405	0.71	-0.7
1,876,452	-	ygiV	MCAODC_09405	0.71	-1.0
1,876,462	-	ygiV	MCAODC_09405	0.73	-0.3
1,876,522	+	ygiV	MCAODC_09405	0.86	-0.3
1,876,522	+	ygiV	MCAODC_09405	0.86	-0.6
1,876,523	-	ygiV	MCAODC_09405	0.86	+0.3
1,876,573	+				+1.0
1,876,573	+				-1.1
1,876,573	+				-1.6
1,876,573	+				+0.2
1,876,574	-				+1.0
1,876,659	+				-0.8
1,876,659	+				+3.1
1,876,659	+				-0.6
1,876,674	+				+2.0
1,876,675	-				+0.3
1,876,677	-				-0.1
1,876,677	-				+1.4
1,876,696	-				+1.2
1,876,702	+				+0.6
1,876,702	+				+1.8
1,876,702	+				+0.2
1,876,702	+				+0.1
1,876,702	+				+0.9
1,876,703	-				-1.6
1,876,703	-				+0.4
1,876,703	-				+2.0
1,876,703	-				-0.4
1,876,703	-				-0.1
1,876,703	-				-0.8
1,876,704	+				+0.5
1,876,715	+				+1.2
1,876,715	+				+0.5
1,876,716	-				-0.3
1,876,737	-				+1.0
1,876,737	-				+0.1
1,876,737	-				-0.6
1,876,754	-				-1.7
1,876,807	+				+0.3
1,876,807	+				-1.7
1,876,818	+				+0.8
1,876,819	-				+0.5
1,876,819	-				+0.2
1,876,860	+	ygiS	MCAODC_09410	0.10	-1.9
1,876,901	+	ygiS	MCAODC_09410	0.13	+0.8
1,876,902	-	ygiS	MCAODC_09410	0.13	+3.0
1,876,956	-	ygiS	MCAODC_09410	0.16	+0.1
1,876,956	-	ygiS	MCAODC_09410	0.16	+0.4
1,876,956	-	ygiS	MCAODC_09410	0.16	+0.3
1,876,975	+	ygiS	MCAODC_09410	0.17	+0.1
1,876,978	-	ygiS	MCAODC_09410	0.17	+0.1