Strain Fitness in Escherichia coli ECRC101 around MCAODC_09025

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
1,796,732	+				-1.6
1,796,733	-				-0.3
1,796,733	-				+0.7
1,796,812	-	mzrA	MCAODC_09015	0.17	+0.5
1,796,844	+	mzrA	MCAODC_09015	0.22	+0.8
1,796,845	-	mzrA	MCAODC_09015	0.22	-2.4
1,796,845	-	mzrA	MCAODC_09015	0.22	-1.0
1,796,867	+	mzrA	MCAODC_09015	0.25	+0.2
1,796,968	+	mzrA	MCAODC_09015	0.41	+0.3
1,796,969	-	mzrA	MCAODC_09015	0.41	-0.1
1,797,033	+	mzrA	MCAODC_09015	0.50	-0.2
1,797,053	+	mzrA	MCAODC_09015	0.53	-0.3
1,797,066	-	mzrA	MCAODC_09015	0.55	+1.9
1,797,100	+	mzrA	MCAODC_09015	0.60	-0.2
1,797,101	-	mzrA	MCAODC_09015	0.61	-0.4
1,797,101	-	mzrA	MCAODC_09015	0.61	-1.5
1,797,102	+	mzrA	MCAODC_09015	0.61	+0.4
1,797,102	+	mzrA	MCAODC_09015	0.61	+0.7
1,797,102	+	mzrA	MCAODC_09015	0.61	+2.0
1,797,102	+	mzrA	MCAODC_09015	0.61	+0.7
1,797,103	-	mzrA	MCAODC_09015	0.61	+1.7
1,797,103	-	mzrA	MCAODC_09015	0.61	+0.2
1,797,203	+	mzrA	MCAODC_09015	0.76	-1.0
1,797,204	-	mzrA	MCAODC_09015	0.76	-0.5
1,797,276	+	mzrA	MCAODC_09015	0.87	+1.0
1,797,367	-				-0.3
1,797,367	-				+0.2
1,797,402	-	yqiM	MCAODC_09020	0.24	-0.2
1,797,413	+	yqiM	MCAODC_09020	0.38	-0.1
1,797,424	+	yqiM	MCAODC_09020	0.53	-2.6
1,797,425	-	yqiM	MCAODC_09020	0.54	-1.5
1,797,425	-	yqiM	MCAODC_09020	0.54	-0.9
1,797,438	+	yqiM	MCAODC_09020	0.71	+0.1
1,797,456	+				+1.0
1,797,457	-				-0.8
1,797,457	-				+0.3
1,797,457	-				-0.4
1,797,477	-				+0.4
1,797,477	-				+0.9
1,797,477	-				-0.9
1,797,477	-				-0.1
1,797,486	+				+0.9
1,797,487	-				+0.5
1,797,574	-				-0.1
1,797,574	-				-2.6
1,797,574	-				-1.0
1,797,574	-				+0.2
1,797,628	+				+0.5
1,797,629	-				-2.4
1,797,629	-				+0.7
1,797,647	+				+0.7
1,797,647	+				+0.5
1,797,647	+				+0.6
1,797,702	+				+0.3
1,797,712	-				+0.7
1,797,764	+				+0.0
1,797,765	-				-0.5
1,797,808	+	exuR	MCAODC_09025	0.13	-1.3
1,797,809	-	exuR	MCAODC_09025	0.13	-1.7
1,797,852	+	exuR	MCAODC_09025	0.19	-0.2
1,797,853	-	exuR	MCAODC_09025	0.19	-1.7
1,797,967	-	exuR	MCAODC_09025	0.34	+0.4
1,797,972	+	exuR	MCAODC_09025	0.34	-0.3
1,797,973	-	exuR	MCAODC_09025	0.34	+2.0
1,798,042	-	exuR	MCAODC_09025	0.43	-0.3
1,798,136	-	exuR	MCAODC_09025	0.55	-2.5
1,798,162	-	exuR	MCAODC_09025	0.59	-0.6
1,798,209	-	exuR	MCAODC_09025	0.65	-0.1
1,798,224	+	exuR	MCAODC_09025	0.67	-0.2
1,798,228	-	exuR	MCAODC_09025	0.67	-1.7
1,798,228	-	exuR	MCAODC_09025	0.67	-0.0
1,798,228	-	exuR	MCAODC_09025	0.67	-0.5
1,798,276	-	exuR	MCAODC_09025	0.73	-0.8
1,798,288	-	exuR	MCAODC_09025	0.75	-0.2
1,798,288	-	exuR	MCAODC_09025	0.75	-2.3
1,798,301	+	exuR	MCAODC_09025	0.77	+0.8
1,798,301	+	exuR	MCAODC_09025	0.77	+0.6
1,798,301	+	exuR	MCAODC_09025	0.77	-0.5
1,798,301	+	exuR	MCAODC_09025	0.77	+2.3
1,798,302	-	exuR	MCAODC_09025	0.77	-0.1
1,798,302	-	exuR	MCAODC_09025	0.77	-1.7
1,798,302	-	exuR	MCAODC_09025	0.77	+0.0
1,798,340	-	exuR	MCAODC_09025	0.82	+2.3
1,798,392	+	exuR	MCAODC_09025	0.88	-0.9
1,798,406	+				-0.5
1,798,407	-				-1.4
1,798,454	+				-0.6
1,798,512	+				-2.0
1,798,513	-				-0.3
1,798,519	+				-1.6
1,798,521	+				-2.2
1,798,522	-				+0.6
1,798,544	+				+1.5
1,798,545	-				-1.1
1,798,594	+				+0.6
1,798,595	-				+0.8
1,798,635	+				-0.4
1,798,636	-				-0.9
1,798,636	-				-0.2
1,798,636	-				+1.2
1,798,679	-				-0.2
1,798,690	-				-0.5
1,798,788	+	exuT	MCAODC_09030	0.14	-1.3
1,798,788	+	exuT	MCAODC_09030	0.14	-1.5
1,798,789	-	exuT	MCAODC_09030	0.14	+0.5
1,798,789	-	exuT	MCAODC_09030	0.14	+0.3
1,798,870	-	exuT	MCAODC_09030	0.20	-1.7
1,798,911	+	exuT	MCAODC_09030	0.23	+0.4
1,798,923	+	exuT	MCAODC_09030	0.24	-2.3
1,798,923	+	exuT	MCAODC_09030	0.24	-0.6
1,798,923	+	exuT	MCAODC_09030	0.24	+0.7
1,798,923	+	exuT	MCAODC_09030	0.24	+0.4
1,798,924	-	exuT	MCAODC_09030	0.24	+0.6
1,798,934	+	exuT	MCAODC_09030	0.25	+0.1
1,798,935	-	exuT	MCAODC_09030	0.25	-1.3
1,798,935	-	exuT	MCAODC_09030	0.25	+1.2
1,798,960	-	exuT	MCAODC_09030	0.27	-0.1
1,798,994	-	exuT	MCAODC_09030	0.29	+0.2
1,799,004	+	exuT	MCAODC_09030	0.30	+1.4
1,799,070	+	exuT	MCAODC_09030	0.35	-0.2
1,799,070	+	exuT	MCAODC_09030	0.35	-2.1
1,799,070	+	exuT	MCAODC_09030	0.35	+0.4
1,799,272	-	exuT	MCAODC_09030	0.51	+1.2
1,799,302	-	exuT	MCAODC_09030	0.53	+0.8
1,799,304	+	exuT	MCAODC_09030	0.53	+0.4
1,799,305	-	exuT	MCAODC_09030	0.53	+0.8
1,799,307	+	exuT	MCAODC_09030	0.54	-0.2
1,799,307	+	exuT	MCAODC_09030	0.54	+0.3
1,799,307	+	exuT	MCAODC_09030	0.54	-1.4
1,799,307	+	exuT	MCAODC_09030	0.54	+0.5
1,799,308	-	exuT	MCAODC_09030	0.54	-0.6
1,799,308	-	exuT	MCAODC_09030	0.54	-0.3
1,799,308	-	exuT	MCAODC_09030	0.54	+1.1
1,799,308	-	exuT	MCAODC_09030	0.54	-0.4
1,799,308	-	exuT	MCAODC_09030	0.54	+1.5
1,799,308	-	exuT	MCAODC_09030	0.54	-0.3
1,799,308	-	exuT	MCAODC_09030	0.54	-1.0
1,799,309	+	exuT	MCAODC_09030	0.54	-0.4
1,799,310	-	exuT	MCAODC_09030	0.54	-1.0
1,799,310	-	exuT	MCAODC_09030	0.54	-0.0
1,799,356	-	exuT	MCAODC_09030	0.57	-2.9
1,799,358	-	exuT	MCAODC_09030	0.57	+0.1
1,799,385	+	exuT	MCAODC_09030	0.60	+1.9
1,799,409	+	exuT	MCAODC_09030	0.61	+1.2
1,799,409	+	exuT	MCAODC_09030	0.61	+0.0
1,799,409	+	exuT	MCAODC_09030	0.61	-1.2
1,799,410	-	exuT	MCAODC_09030	0.61	+1.1
1,799,410	-	exuT	MCAODC_09030	0.61	-0.8
1,799,410	-	exuT	MCAODC_09030	0.61	-2.3
1,799,410	-	exuT	MCAODC_09030	0.61	+0.7
1,799,446	+	exuT	MCAODC_09030	0.64	+0.1