Strain Fitness in Escherichia coli ECRC101 around MCAODC_07470

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
1,511,653	-	glpE	MCAODC_07460	0.70	-1.0
1,511,653	-	glpE	MCAODC_07460	0.70	-2.7
1,511,670	+	glpE	MCAODC_07460	0.75	+0.7
1,511,671	-	glpE	MCAODC_07460	0.76	+0.0
1,511,682	+	glpE	MCAODC_07460	0.79	+0.6
1,511,683	-	glpE	MCAODC_07460	0.79	+1.0
1,511,683	-	glpE	MCAODC_07460	0.79	-1.1
1,511,683	-	glpE	MCAODC_07460	0.79	+0.5
1,511,684	+	glpE	MCAODC_07460	0.80	-0.4
1,511,684	+	glpE	MCAODC_07460	0.80	-2.5
1,511,685	-	glpE	MCAODC_07460	0.80	-3.3
1,511,757	-				+0.3
1,511,757	-				-0.1
1,511,758	+				-2.8
1,511,759	-				+1.6
1,511,759	-				-0.1
1,511,780	+				+0.5
1,511,781	-				+0.4
1,511,806	+				-0.5
1,511,807	-				+0.5
1,511,849	+				-0.1
1,511,849	+				-0.6
1,511,849	+				-0.4
1,511,850	-				-0.1
1,511,850	-				+0.9
1,511,850	-				+0.7
1,511,890	+	glpG	MCAODC_07465	0.11	-0.0
1,511,891	-	glpG	MCAODC_07465	0.12	-1.1
1,512,118	+	glpG	MCAODC_07465	0.39	-0.7
1,512,118	+	glpG	MCAODC_07465	0.39	+2.6
1,512,118	+	glpG	MCAODC_07465	0.39	-0.5
1,512,118	+	glpG	MCAODC_07465	0.39	+0.3
1,512,156	+	glpG	MCAODC_07465	0.43	+0.4
1,512,156	+	glpG	MCAODC_07465	0.43	-0.2
1,512,244	+	glpG	MCAODC_07465	0.54	-0.1
1,512,244	+	glpG	MCAODC_07465	0.54	+0.2
1,512,244	+	glpG	MCAODC_07465	0.54	+0.2
1,512,273	-	glpG	MCAODC_07465	0.58	+0.3
1,512,273	-	glpG	MCAODC_07465	0.58	+0.9
1,512,311	-	glpG	MCAODC_07465	0.62	+0.5
1,512,315	+	glpG	MCAODC_07465	0.63	-0.3
1,512,315	+	glpG	MCAODC_07465	0.63	+0.0
1,512,315	+	glpG	MCAODC_07465	0.63	-0.1
1,512,315	+	glpG	MCAODC_07465	0.63	-1.2
1,512,316	-	glpG	MCAODC_07465	0.63	-1.5
1,512,316	-	glpG	MCAODC_07465	0.63	-1.2
1,512,325	+	glpG	MCAODC_07465	0.64	+0.7
1,512,354	-	glpG	MCAODC_07465	0.67	-0.3
1,512,354	-	glpG	MCAODC_07465	0.67	+1.8
1,512,354	-	glpG	MCAODC_07465	0.67	+0.5
1,512,354	-	glpG	MCAODC_07465	0.67	+0.5
1,512,407	+	glpG	MCAODC_07465	0.74	-0.8
1,512,407	+	glpG	MCAODC_07465	0.74	+0.4
1,512,422	+	glpG	MCAODC_07465	0.75	-1.9
1,512,432	+	glpG	MCAODC_07465	0.77	+0.7
1,512,464	+	glpG	MCAODC_07465	0.81	-1.3
1,512,464	+	glpG	MCAODC_07465	0.81	+0.2
1,512,464	+	glpG	MCAODC_07465	0.81	+1.3
1,512,464	+	glpG	MCAODC_07465	0.81	-0.4
1,512,465	-	glpG	MCAODC_07465	0.81	+1.0
1,512,480	+	glpG	MCAODC_07465	0.82	+0.5
1,512,484	+	glpG	MCAODC_07465	0.83	-0.3
1,512,484	+	glpG	MCAODC_07465	0.83	-0.6
1,512,484	+	glpG	MCAODC_07465	0.83	+0.2
1,512,484	+	glpG	MCAODC_07465	0.83	-1.5
1,512,485	-	glpG	MCAODC_07465	0.83	+1.0
1,512,485	-	glpG	MCAODC_07465	0.83	-3.1
1,512,485	-	glpG	MCAODC_07465	0.83	+0.0
1,512,580	-				-0.4
1,512,623	+				-0.7
1,512,624	-				-0.4
1,512,637	+				+2.1
1,512,637	+				-0.3
1,512,668	+				-1.3
1,512,669	-				-0.5
1,512,669	-				-1.2
1,512,696	+				-2.2
1,512,697	-				-1.6
1,512,697	-				-0.9
1,512,697	-				-0.2
1,512,746	+	glpR	MCAODC_07470	0.14	-0.8
1,512,851	+	glpR	MCAODC_07470	0.28	+0.5
1,512,929	+	glpR	MCAODC_07470	0.38	+0.0
1,513,073	-	glpR	MCAODC_07470	0.57	-2.8
1,513,226	+	glpR	MCAODC_07470	0.77	-0.3
1,513,226	+	glpR	MCAODC_07470	0.77	-0.1
1,513,247	+	glpR	MCAODC_07470	0.80	-2.8
1,513,248	-	glpR	MCAODC_07470	0.80	-0.8
1,513,248	-	glpR	MCAODC_07470	0.80	-0.8
1,513,301	+	glpR	MCAODC_07470	0.87	+0.6
1,513,315	+	glpR	MCAODC_07470	0.89	-0.7
1,513,315	+	glpR	MCAODC_07470	0.89	-1.0
1,513,315	+	glpR	MCAODC_07470	0.89	-0.5
1,513,315	+	glpR	MCAODC_07470	0.89	-3.0
1,513,315	+	glpR	MCAODC_07470	0.89	-4.3
1,513,315	+	glpR	MCAODC_07470	0.89	-0.0
1,513,316	-	glpR	MCAODC_07470	0.89	-1.4
1,513,316	-	glpR	MCAODC_07470	0.89	-1.8
1,513,316	-	glpR	MCAODC_07470	0.89	-1.4
1,513,316	-	glpR	MCAODC_07470	0.89	+0.2
1,513,326	+				+1.5
1,513,326	+				-0.2
1,513,348	+				-2.6
1,513,379	+				-2.4
1,513,380	-				-0.5
1,513,440	+				-0.2
1,513,440	+				-0.1
1,513,440	+				+0.8
1,513,441	-				-0.2
1,513,567	+	rtcR	MCAODC_07475	0.12	-0.1
1,513,568	-	rtcR	MCAODC_07475	0.12	-0.2
1,513,616	-	rtcR	MCAODC_07475	0.15	+0.4
1,513,645	+	rtcR	MCAODC_07475	0.16	+0.8
1,513,646	-	rtcR	MCAODC_07475	0.17	+0.3
1,513,647	+	rtcR	MCAODC_07475	0.17	+1.7
1,513,648	-	rtcR	MCAODC_07475	0.17	+1.0
1,513,687	+	rtcR	MCAODC_07475	0.19	+0.1
1,513,688	-	rtcR	MCAODC_07475	0.19	+1.6
1,513,688	-	rtcR	MCAODC_07475	0.19	-2.6
1,513,813	+	rtcR	MCAODC_07475	0.27	+1.3
1,513,814	-	rtcR	MCAODC_07475	0.27	-0.4
1,513,814	-	rtcR	MCAODC_07475	0.27	+0.6
1,513,814	-	rtcR	MCAODC_07475	0.27	+0.8
1,513,860	+	rtcR	MCAODC_07475	0.30	+0.5
1,513,860	+	rtcR	MCAODC_07475	0.30	+0.4
1,513,860	+	rtcR	MCAODC_07475	0.30	-1.0
1,513,870	+	rtcR	MCAODC_07475	0.31	-0.1
1,513,870	+	rtcR	MCAODC_07475	0.31	+1.4
1,513,938	+	rtcR	MCAODC_07475	0.35	+0.1
1,513,940	+	rtcR	MCAODC_07475	0.35	+3.5
1,514,147	+	rtcR	MCAODC_07475	0.48	-0.4
1,514,148	-	rtcR	MCAODC_07475	0.48	+0.8
1,514,148	-	rtcR	MCAODC_07475	0.48	+1.1
1,514,148	-	rtcR	MCAODC_07475	0.48	-0.1
1,514,148	-	rtcR	MCAODC_07475	0.48	-1.2
1,514,266	+	rtcR	MCAODC_07475	0.55	-2.1
1,514,266	+	rtcR	MCAODC_07475	0.55	-0.9
1,514,289	-	rtcR	MCAODC_07475	0.57	+0.2
1,514,298	-	rtcR	MCAODC_07475	0.57	-1.3
1,514,299	+	rtcR	MCAODC_07475	0.57	-0.9
1,514,299	+	rtcR	MCAODC_07475	0.57	+0.2
1,514,299	+	rtcR	MCAODC_07475	0.57	-1.2
1,514,299	+	rtcR	MCAODC_07475	0.57	-0.6
1,514,300	-	rtcR	MCAODC_07475	0.57	+0.8
1,514,300	-	rtcR	MCAODC_07475	0.57	+0.8
1,514,300	-	rtcR	MCAODC_07475	0.57	+0.6
1,514,300	-	rtcR	MCAODC_07475	0.57	+1.1
1,514,343	-	rtcR	MCAODC_07475	0.60	-0.1
1,514,343	-	rtcR	MCAODC_07475	0.60	+0.2
1,514,365	+	rtcR	MCAODC_07475	0.61	+1.2
1,514,366	-	rtcR	MCAODC_07475	0.62	-1.5