Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt thiH and MCAODC_03910 are separated by 434 nucleotides MCAODC_03910 and rpoC are separated by 212 nucleotides
MCAODC_03900: thiH - 2-iminoacetate synthase ThiH, at 785,459 to 786,592
thiH
MCAODC_03910: MCAODC_03910 - stationary phase growth adaptation protein, at 787,027 to 787,470
_03910
MCAODC_03915: rpoC - DNA-directed RNA polymerase subunit beta', at 787,683 to 791,906
rpoC
Position (kb) 787
788 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 786.027 kb on - strand, within thiH at 786.027 kb on - strand, within thiH at 786.112 kb on + strand, within thiH at 786.112 kb on + strand, within thiH at 786.113 kb on - strand, within thiH at 786.117 kb on + strand, within thiH at 786.117 kb on + strand, within thiH at 786.118 kb on - strand, within thiH at 786.133 kb on - strand, within thiH at 786.167 kb on + strand, within thiH at 786.167 kb on + strand, within thiH at 786.167 kb on + strand, within thiH at 786.167 kb on + strand, within thiH at 786.167 kb on + strand, within thiH at 786.167 kb on + strand, within thiH at 786.167 kb on + strand, within thiH at 786.168 kb on - strand, within thiH at 786.168 kb on - strand, within thiH at 786.168 kb on - strand, within thiH at 786.168 kb on - strand, within thiH at 786.168 kb on - strand, within thiH at 786.170 kb on - strand, within thiH at 786.170 kb on - strand, within thiH at 786.170 kb on - strand, within thiH at 786.253 kb on + strand, within thiH at 786.254 kb on - strand, within thiH at 786.281 kb on - strand, within thiH at 786.298 kb on - strand, within thiH at 786.298 kb on - strand, within thiH at 786.298 kb on - strand, within thiH at 786.403 kb on + strand, within thiH at 786.403 kb on + strand, within thiH at 786.404 kb on - strand, within thiH at 786.404 kb on - strand, within thiH at 786.404 kb on - strand, within thiH at 786.404 kb on - strand, within thiH at 786.406 kb on + strand, within thiH at 786.443 kb on + strand, within thiH at 786.563 kb on + strand at 786.564 kb on - strand at 786.564 kb on - strand at 786.564 kb on - strand at 786.564 kb on - strand at 786.588 kb on + strand at 786.603 kb on - strand at 786.603 kb on - strand at 786.603 kb on - strand at 786.617 kb on - strand at 786.808 kb on + strand at 786.808 kb on + strand at 786.809 kb on - strand at 786.809 kb on - strand at 786.816 kb on + strand at 786.816 kb on + strand at 786.817 kb on - strand at 786.820 kb on + strand at 786.821 kb on - strand at 786.828 kb on + strand at 786.829 kb on - strand at 786.829 kb on - strand at 786.829 kb on - strand at 786.829 kb on - strand at 786.829 kb on - strand at 786.833 kb on + strand at 786.834 kb on - strand at 786.834 kb on - strand at 786.965 kb on + strand at 786.988 kb on + strand at 786.988 kb on + strand at 786.988 kb on + strand at 786.988 kb on + strand at 786.988 kb on + strand at 786.989 kb on - strand at 786.989 kb on - strand at 787.028 kb on + strand at 787.029 kb on - strand at 787.029 kb on - strand at 787.029 kb on - strand at 787.029 kb on - strand at 787.038 kb on + strand at 787.091 kb on + strand, within MCAODC_03910 at 787.091 kb on + strand, within MCAODC_03910 at 787.092 kb on - strand, within MCAODC_03910 at 787.092 kb on - strand, within MCAODC_03910 at 787.101 kb on + strand, within MCAODC_03910 at 787.102 kb on - strand, within MCAODC_03910 at 787.114 kb on + strand, within MCAODC_03910 at 787.115 kb on - strand, within MCAODC_03910 at 787.136 kb on + strand, within MCAODC_03910 at 787.136 kb on + strand, within MCAODC_03910 at 787.136 kb on + strand, within MCAODC_03910 at 787.137 kb on - strand, within MCAODC_03910 at 787.137 kb on - strand, within MCAODC_03910 at 787.137 kb on - strand, within MCAODC_03910 at 787.140 kb on + strand, within MCAODC_03910 at 787.140 kb on + strand, within MCAODC_03910 at 787.141 kb on - strand, within MCAODC_03910 at 787.141 kb on - strand, within MCAODC_03910 at 787.158 kb on + strand, within MCAODC_03910 at 787.158 kb on + strand, within MCAODC_03910 at 787.158 kb on + strand, within MCAODC_03910 at 787.159 kb on - strand, within MCAODC_03910 at 787.185 kb on + strand, within MCAODC_03910 at 787.186 kb on - strand, within MCAODC_03910 at 787.186 kb on - strand, within MCAODC_03910 at 787.195 kb on + strand, within MCAODC_03910 at 787.196 kb on - strand, within MCAODC_03910 at 787.215 kb on + strand, within MCAODC_03910 at 787.216 kb on - strand, within MCAODC_03910 at 787.216 kb on - strand, within MCAODC_03910 at 787.259 kb on + strand, within MCAODC_03910 at 787.259 kb on + strand, within MCAODC_03910 at 787.260 kb on - strand, within MCAODC_03910 at 787.265 kb on - strand, within MCAODC_03910 at 787.298 kb on + strand, within MCAODC_03910 at 787.299 kb on - strand, within MCAODC_03910 at 787.325 kb on + strand, within MCAODC_03910 at 787.325 kb on + strand, within MCAODC_03910 at 787.326 kb on - strand, within MCAODC_03910 at 787.326 kb on - strand, within MCAODC_03910 at 787.326 kb on - strand, within MCAODC_03910 at 787.326 kb on - strand, within MCAODC_03910 at 787.326 kb on - strand, within MCAODC_03910 at 787.326 kb on - strand, within MCAODC_03910 at 787.329 kb on + strand, within MCAODC_03910 at 787.348 kb on + strand, within MCAODC_03910 at 787.349 kb on - strand, within MCAODC_03910 at 787.379 kb on + strand, within MCAODC_03910 at 787.379 kb on + strand, within MCAODC_03910 at 787.380 kb on - strand, within MCAODC_03910 at 787.380 kb on - strand, within MCAODC_03910 at 787.383 kb on + strand, within MCAODC_03910 at 787.384 kb on - strand, within MCAODC_03910 at 787.384 kb on - strand, within MCAODC_03910 at 787.408 kb on + strand, within MCAODC_03910 at 787.481 kb on + strand at 787.490 kb on + strand at 787.490 kb on + strand at 787.500 kb on + strand at 787.500 kb on + strand at 787.500 kb on + strand at 787.500 kb on + strand at 787.500 kb on + strand at 787.501 kb on - strand at 787.501 kb on - strand at 787.503 kb on + strand at 787.504 kb on - strand at 787.504 kb on - strand at 787.532 kb on + strand at 787.532 kb on + strand at 787.532 kb on + strand at 787.552 kb on + strand at 787.552 kb on + strand at 787.556 kb on - strand at 787.565 kb on + strand at 787.566 kb on - strand at 787.566 kb on - strand at 787.566 kb on - strand at 787.566 kb on - strand at 787.574 kb on + strand at 787.575 kb on - strand at 787.595 kb on + strand at 787.595 kb on + strand at 787.662 kb on - strand at 787.685 kb on - strand at 787.685 kb on - strand at 787.800 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 786,027 - thiH MCAODC_03900 0.50 -2.3 786,027 - thiH MCAODC_03900 0.50 +0.1 786,112 + thiH MCAODC_03900 0.58 -4.3 786,112 + thiH MCAODC_03900 0.58 -3.4 786,113 - thiH MCAODC_03900 0.58 -2.8 786,117 + thiH MCAODC_03900 0.58 +1.1 786,117 + thiH MCAODC_03900 0.58 -0.9 786,118 - thiH MCAODC_03900 0.58 -0.2 786,133 - thiH MCAODC_03900 0.59 +0.9 786,167 + thiH MCAODC_03900 0.62 +0.3 786,167 + thiH MCAODC_03900 0.62 -2.8 786,167 + thiH MCAODC_03900 0.62 -1.4 786,167 + thiH MCAODC_03900 0.62 -1.2 786,167 + thiH MCAODC_03900 0.62 +0.1 786,167 + thiH MCAODC_03900 0.62 +0.2 786,167 + thiH MCAODC_03900 0.62 -0.5 786,168 - thiH MCAODC_03900 0.63 -0.2 786,168 - thiH MCAODC_03900 0.63 -1.9 786,168 - thiH MCAODC_03900 0.63 -0.6 786,168 - thiH MCAODC_03900 0.63 -2.8 786,168 - thiH MCAODC_03900 0.63 -2.7 786,170 - thiH MCAODC_03900 0.63 -1.2 786,170 - thiH MCAODC_03900 0.63 -0.5 786,170 - thiH MCAODC_03900 0.63 +0.3 786,253 + thiH MCAODC_03900 0.70 -1.0 786,254 - thiH MCAODC_03900 0.70 -0.6 786,281 - thiH MCAODC_03900 0.72 -1.4 786,298 - thiH MCAODC_03900 0.74 +0.2 786,298 - thiH MCAODC_03900 0.74 +0.2 786,298 - thiH MCAODC_03900 0.74 +0.2 786,403 + thiH MCAODC_03900 0.83 -1.3 786,403 + thiH MCAODC_03900 0.83 -1.0 786,404 - thiH MCAODC_03900 0.83 -0.5 786,404 - thiH MCAODC_03900 0.83 -3.0 786,404 - thiH MCAODC_03900 0.83 -1.2 786,404 - thiH MCAODC_03900 0.83 -2.2 786,406 + thiH MCAODC_03900 0.84 -1.1 786,443 + thiH MCAODC_03900 0.87 -2.6 786,563 + -1.7 786,564 - -1.9 786,564 - -0.3 786,564 - -1.5 786,564 - +0.0 786,588 + +0.5 786,603 - +1.8 786,603 - +0.5 786,603 - -0.1 786,617 - -0.4 786,808 + +0.2 786,808 + +0.4 786,809 - -0.6 786,809 - -0.2 786,816 + -0.7 786,816 + +0.4 786,817 - -0.4 786,820 + +0.2 786,821 - +0.2 786,828 + -0.1 786,829 - -0.6 786,829 - +1.1 786,829 - +0.6 786,829 - +0.8 786,829 - +0.7 786,833 + +1.5 786,834 - -1.0 786,834 - -3.0 786,965 + -0.2 786,988 + -2.9 786,988 + -0.0 786,988 + -0.7 786,988 + -1.2 786,988 + +0.1 786,989 - -0.5 786,989 - +0.9 787,028 + -1.3 787,029 - +0.3 787,029 - +0.3 787,029 - +1.8 787,029 - -0.4 787,038 + +1.1 787,091 + MCAODC_03910 0.14 +0.9 787,091 + MCAODC_03910 0.14 +1.9 787,092 - MCAODC_03910 0.15 -0.2 787,092 - MCAODC_03910 0.15 -1.0 787,101 + MCAODC_03910 0.17 +0.4 787,102 - MCAODC_03910 0.17 +0.3 787,114 + MCAODC_03910 0.20 -0.9 787,115 - MCAODC_03910 0.20 +0.1 787,136 + MCAODC_03910 0.25 -0.7 787,136 + MCAODC_03910 0.25 -0.1 787,136 + MCAODC_03910 0.25 +0.4 787,137 - MCAODC_03910 0.25 +0.2 787,137 - MCAODC_03910 0.25 +1.5 787,137 - MCAODC_03910 0.25 -0.2 787,140 + MCAODC_03910 0.25 +1.0 787,140 + MCAODC_03910 0.25 +0.8 787,141 - MCAODC_03910 0.26 +0.6 787,141 - MCAODC_03910 0.26 -0.7 787,158 + MCAODC_03910 0.30 +0.8 787,158 + MCAODC_03910 0.30 -0.2 787,158 + MCAODC_03910 0.30 +0.2 787,159 - MCAODC_03910 0.30 -0.5 787,185 + MCAODC_03910 0.36 -1.4 787,186 - MCAODC_03910 0.36 -0.1 787,186 - MCAODC_03910 0.36 +0.7 787,195 + MCAODC_03910 0.38 -0.3 787,196 - MCAODC_03910 0.38 +0.4 787,215 + MCAODC_03910 0.42 +1.4 787,216 - MCAODC_03910 0.43 +0.5 787,216 - MCAODC_03910 0.43 -0.1 787,259 + MCAODC_03910 0.52 -1.1 787,259 + MCAODC_03910 0.52 +1.6 787,260 - MCAODC_03910 0.52 -0.9 787,265 - MCAODC_03910 0.54 -1.7 787,298 + MCAODC_03910 0.61 -0.3 787,299 - MCAODC_03910 0.61 +0.1 787,325 + MCAODC_03910 0.67 -0.7 787,325 + MCAODC_03910 0.67 +1.0 787,326 - MCAODC_03910 0.67 +0.4 787,326 - MCAODC_03910 0.67 -0.5 787,326 - MCAODC_03910 0.67 -3.2 787,326 - MCAODC_03910 0.67 -2.5 787,326 - MCAODC_03910 0.67 -0.9 787,326 - MCAODC_03910 0.67 -0.4 787,329 + MCAODC_03910 0.68 -1.0 787,348 + MCAODC_03910 0.72 -0.5 787,349 - MCAODC_03910 0.73 -0.1 787,379 + MCAODC_03910 0.79 -1.5 787,379 + MCAODC_03910 0.79 -1.2 787,380 - MCAODC_03910 0.80 +1.5 787,380 - MCAODC_03910 0.80 -1.8 787,383 + MCAODC_03910 0.80 +0.4 787,384 - MCAODC_03910 0.80 -0.3 787,384 - MCAODC_03910 0.80 -1.9 787,408 + MCAODC_03910 0.86 +0.1 787,481 + +1.5 787,490 + +0.4 787,490 + -1.1 787,500 + -1.2 787,500 + +1.2 787,500 + -0.5 787,500 + -1.1 787,500 + +0.7 787,501 - +3.2 787,501 - +1.7 787,503 + -0.7 787,504 - +0.0 787,504 - -0.4 787,532 + +0.2 787,532 + -2.7 787,532 + -0.0 787,552 + -1.6 787,552 + +0.8 787,556 - +0.4 787,565 + -0.6 787,566 - -0.4 787,566 - +0.6 787,566 - -0.1 787,566 - +0.6 787,574 + +0.3 787,575 - -0.5 787,595 + +1.0 787,595 + -0.1 787,662 - -0.2 787,685 - +1.6 787,685 - -0.7 787,800 - -0.2
Or see this region's nucleotide sequence