Strain Fitness in Escherichia coli ECRC101 around MCAODC_03515

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_03505 and yfdR are separated by 127 nucleotidesyfdR and MCAODC_03515 overlap by 10 nucleotidesMCAODC_03515 and MCAODC_03520 overlap by 4 nucleotidesMCAODC_03520 and MCAODC_03525 are separated by 335 nucleotides MCAODC_03505: MCAODC_03505 - CPS-53 (KpLE1) prophage protein, at 706,063 to 706,449 _03505 MCAODC_03510: yfdR - 5'-deoxynucleotidase, at 706,577 to 707,113 yfdR MCAODC_03515: MCAODC_03515 - Eae protein, at 707,104 to 707,454 _03515 MCAODC_03520: MCAODC_03520 - SAM-dependent methyltransferase, at 707,451 to 707,735 _03520 MCAODC_03525: MCAODC_03525 - hypothetical protein, at 708,071 to 708,268 _03525 Position (kb) 707 708Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 706.165 kb on - strand, within MCAODC_03505at 706.225 kb on - strand, within MCAODC_03505at 706.339 kb on - strand, within MCAODC_03505at 706.493 kb on + strandat 706.494 kb on - strandat 706.505 kb on + strandat 706.534 kb on - strandat 706.562 kb on + strandat 706.562 kb on + strandat 706.563 kb on - strandat 706.563 kb on - strandat 706.630 kb on + strandat 706.676 kb on - strand, within yfdRat 706.776 kb on + strand, within yfdRat 706.800 kb on - strand, within yfdRat 706.800 kb on - strand, within yfdRat 706.844 kb on + strand, within yfdRat 706.845 kb on - strand, within yfdRat 706.845 kb on - strand, within yfdRat 706.845 kb on - strand, within yfdRat 706.845 kb on - strand, within yfdRat 706.846 kb on + strand, within yfdRat 706.847 kb on - strand, within yfdRat 706.906 kb on + strand, within yfdRat 706.907 kb on - strand, within yfdRat 706.925 kb on + strand, within yfdRat 706.936 kb on + strand, within yfdRat 706.936 kb on + strand, within yfdRat 706.936 kb on + strand, within yfdRat 706.937 kb on - strand, within yfdRat 706.937 kb on - strand, within yfdRat 706.995 kb on + strand, within yfdRat 707.047 kb on + strand, within yfdRat 707.047 kb on + strand, within yfdRat 707.047 kb on + strand, within yfdRat 707.047 kb on + strand, within yfdRat 707.047 kb on + strand, within yfdRat 707.068 kb on + strandat 707.081 kb on - strandat 707.097 kb on + strandat 707.098 kb on - strandat 707.191 kb on + strand, within MCAODC_03515at 707.191 kb on + strand, within MCAODC_03515at 707.217 kb on - strand, within MCAODC_03515at 707.217 kb on - strand, within MCAODC_03515at 707.217 kb on - strand, within MCAODC_03515at 707.241 kb on + strand, within MCAODC_03515at 707.241 kb on + strand, within MCAODC_03515at 707.242 kb on - strand, within MCAODC_03515at 707.244 kb on + strand, within MCAODC_03515at 707.244 kb on + strand, within MCAODC_03515at 707.244 kb on + strand, within MCAODC_03515at 707.245 kb on - strand, within MCAODC_03515at 707.245 kb on - strand, within MCAODC_03515at 707.245 kb on - strand, within MCAODC_03515at 707.245 kb on - strand, within MCAODC_03515at 707.245 kb on - strand, within MCAODC_03515at 707.245 kb on - strand, within MCAODC_03515at 707.245 kb on - strand, within MCAODC_03515at 707.245 kb on - strand, within MCAODC_03515at 707.245 kb on - strand, within MCAODC_03515at 707.245 kb on - strand, within MCAODC_03515at 707.245 kb on - strand, within MCAODC_03515at 707.245 kb on - strand, within MCAODC_03515at 707.248 kb on + strand, within MCAODC_03515at 707.249 kb on - strand, within MCAODC_03515at 707.249 kb on - strand, within MCAODC_03515at 707.290 kb on - strand, within MCAODC_03515at 707.290 kb on - strand, within MCAODC_03515at 707.296 kb on - strand, within MCAODC_03515at 707.354 kb on + strand, within MCAODC_03515at 707.354 kb on + strand, within MCAODC_03515at 707.354 kb on + strand, within MCAODC_03515at 707.355 kb on - strand, within MCAODC_03515at 707.358 kb on + strand, within MCAODC_03515at 707.359 kb on - strand, within MCAODC_03515at 707.359 kb on - strand, within MCAODC_03515at 707.359 kb on - strand, within MCAODC_03515at 707.396 kb on - strand, within MCAODC_03515at 707.585 kb on + strand, within MCAODC_03520at 707.603 kb on - strand, within MCAODC_03520at 707.620 kb on + strand, within MCAODC_03520at 707.620 kb on + strand, within MCAODC_03520at 707.620 kb on + strand, within MCAODC_03520at 707.621 kb on - strand, within MCAODC_03520at 707.652 kb on - strand, within MCAODC_03520at 707.653 kb on + strand, within MCAODC_03520at 707.654 kb on - strand, within MCAODC_03520at 707.709 kb on + strandat 707.824 kb on + strandat 707.839 kb on + strandat 707.845 kb on + strandat 707.910 kb on - strandat 707.957 kb on + strandat 707.961 kb on + strandat 707.961 kb on + strandat 707.962 kb on - strandat 707.963 kb on + strandat 707.975 kb on + strandat 707.976 kb on - strandat 708.094 kb on - strand, within MCAODC_03525at 708.094 kb on - strand, within MCAODC_03525at 708.123 kb on + strand, within MCAODC_03525at 708.133 kb on + strand, within MCAODC_03525at 708.144 kb on + strand, within MCAODC_03525at 708.145 kb on - strand, within MCAODC_03525at 708.145 kb on - strand, within MCAODC_03525at 708.178 kb on + strand, within MCAODC_03525at 708.179 kb on - strand, within MCAODC_03525at 708.186 kb on + strand, within MCAODC_03525at 708.187 kb on - strand, within MCAODC_03525at 708.187 kb on - strand, within MCAODC_03525at 708.199 kb on + strand, within MCAODC_03525at 708.199 kb on + strand, within MCAODC_03525at 708.200 kb on - strand, within MCAODC_03525at 708.225 kb on + strand, within MCAODC_03525at 708.225 kb on + strand, within MCAODC_03525at 708.226 kb on - strand, within MCAODC_03525at 708.226 kb on - strand, within MCAODC_03525at 708.234 kb on + strand, within MCAODC_03525at 708.234 kb on + strand, within MCAODC_03525at 708.234 kb on + strand, within MCAODC_03525at 708.235 kb on - strand, within MCAODC_03525at 708.235 kb on - strand, within MCAODC_03525at 708.235 kb on - strand, within MCAODC_03525at 708.235 kb on - strand, within MCAODC_03525at 708.235 kb on - strand, within MCAODC_03525at 708.267 kb on - strandat 708.304 kb on + strandat 708.345 kb on - strandat 708.414 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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706,165 - MCAODC_03505 0.26 +2.1
706,225 - MCAODC_03505 0.42 -0.3
706,339 - MCAODC_03505 0.71 +1.6
706,493 + -0.3
706,494 - +0.5
706,505 + -0.6
706,534 - -0.2
706,562 + -1.2
706,562 + -0.5
706,563 - +0.5
706,563 - +1.2
706,630 + -1.0
706,676 - yfdR MCAODC_03510 0.18 +0.8
706,776 + yfdR MCAODC_03510 0.37 +0.2
706,800 - yfdR MCAODC_03510 0.42 -0.0
706,800 - yfdR MCAODC_03510 0.42 -0.7
706,844 + yfdR MCAODC_03510 0.50 +0.8
706,845 - yfdR MCAODC_03510 0.50 +0.1
706,845 - yfdR MCAODC_03510 0.50 -0.6
706,845 - yfdR MCAODC_03510 0.50 +0.5
706,845 - yfdR MCAODC_03510 0.50 -0.3
706,846 + yfdR MCAODC_03510 0.50 -0.9
706,847 - yfdR MCAODC_03510 0.50 -0.2
706,906 + yfdR MCAODC_03510 0.61 -0.8
706,907 - yfdR MCAODC_03510 0.61 +0.1
706,925 + yfdR MCAODC_03510 0.65 +1.2
706,936 + yfdR MCAODC_03510 0.67 +0.5
706,936 + yfdR MCAODC_03510 0.67 -0.1
706,936 + yfdR MCAODC_03510 0.67 +0.5
706,937 - yfdR MCAODC_03510 0.67 -0.0
706,937 - yfdR MCAODC_03510 0.67 +0.4
706,995 + yfdR MCAODC_03510 0.78 +0.6
707,047 + yfdR MCAODC_03510 0.88 +0.5
707,047 + yfdR MCAODC_03510 0.88 -0.4
707,047 + yfdR MCAODC_03510 0.88 -3.3
707,047 + yfdR MCAODC_03510 0.88 +2.1
707,047 + yfdR MCAODC_03510 0.88 +0.1
707,068 + -1.0
707,081 - +0.2
707,097 + +0.1
707,098 - -0.7
707,191 + MCAODC_03515 0.25 +0.1
707,191 + MCAODC_03515 0.25 -2.4
707,217 - MCAODC_03515 0.32 +0.3
707,217 - MCAODC_03515 0.32 +0.4
707,217 - MCAODC_03515 0.32 +1.3
707,241 + MCAODC_03515 0.39 +0.3
707,241 + MCAODC_03515 0.39 -0.1
707,242 - MCAODC_03515 0.39 -1.4
707,244 + MCAODC_03515 0.40 +0.4
707,244 + MCAODC_03515 0.40 -0.2
707,244 + MCAODC_03515 0.40 -1.7
707,245 - MCAODC_03515 0.40 +0.1
707,245 - MCAODC_03515 0.40 -0.5
707,245 - MCAODC_03515 0.40 +0.7
707,245 - MCAODC_03515 0.40 -0.4
707,245 - MCAODC_03515 0.40 -0.1
707,245 - MCAODC_03515 0.40 -0.7
707,245 - MCAODC_03515 0.40 -0.2
707,245 - MCAODC_03515 0.40 +0.2
707,245 - MCAODC_03515 0.40 +0.5
707,245 - MCAODC_03515 0.40 -0.1
707,245 - MCAODC_03515 0.40 +0.4
707,245 - MCAODC_03515 0.40 -1.0
707,248 + MCAODC_03515 0.41 -0.6
707,249 - MCAODC_03515 0.41 +0.2
707,249 - MCAODC_03515 0.41 +0.7
707,290 - MCAODC_03515 0.53 -0.4
707,290 - MCAODC_03515 0.53 +0.2
707,296 - MCAODC_03515 0.55 +0.7
707,354 + MCAODC_03515 0.71 +0.5
707,354 + MCAODC_03515 0.71 +1.2
707,354 + MCAODC_03515 0.71 +0.1
707,355 - MCAODC_03515 0.72 -1.8
707,358 + MCAODC_03515 0.72 -0.2
707,359 - MCAODC_03515 0.73 +0.5
707,359 - MCAODC_03515 0.73 +0.7
707,359 - MCAODC_03515 0.73 -1.0
707,396 - MCAODC_03515 0.83 -0.2
707,585 + MCAODC_03520 0.47 -0.9
707,603 - MCAODC_03520 0.53 +1.0
707,620 + MCAODC_03520 0.59 -0.8
707,620 + MCAODC_03520 0.59 -0.0
707,620 + MCAODC_03520 0.59 +1.2
707,621 - MCAODC_03520 0.60 +1.2
707,652 - MCAODC_03520 0.71 -2.7
707,653 + MCAODC_03520 0.71 -0.2
707,654 - MCAODC_03520 0.71 -0.1
707,709 + +0.8
707,824 + +0.2
707,839 + +1.3
707,845 + +0.8
707,910 - -0.2
707,957 + -1.1
707,961 + -2.6
707,961 + -0.3
707,962 - -0.6
707,963 + +1.1
707,975 + -0.4
707,976 - -1.4
708,094 - MCAODC_03525 0.12 -1.2
708,094 - MCAODC_03525 0.12 +0.6
708,123 + MCAODC_03525 0.26 -1.6
708,133 + MCAODC_03525 0.31 +2.1
708,144 + MCAODC_03525 0.37 +0.5
708,145 - MCAODC_03525 0.37 +1.0
708,145 - MCAODC_03525 0.37 +0.4
708,178 + MCAODC_03525 0.54 -0.9
708,179 - MCAODC_03525 0.55 -2.5
708,186 + MCAODC_03525 0.58 -0.4
708,187 - MCAODC_03525 0.59 -0.2
708,187 - MCAODC_03525 0.59 +0.8
708,199 + MCAODC_03525 0.65 -0.3
708,199 + MCAODC_03525 0.65 +0.9
708,200 - MCAODC_03525 0.65 -0.6
708,225 + MCAODC_03525 0.78 -0.5
708,225 + MCAODC_03525 0.78 +0.0
708,226 - MCAODC_03525 0.78 +0.3
708,226 - MCAODC_03525 0.78 -0.5
708,234 + MCAODC_03525 0.82 +1.1
708,234 + MCAODC_03525 0.82 +1.1
708,234 + MCAODC_03525 0.82 -0.7
708,235 - MCAODC_03525 0.83 -0.3
708,235 - MCAODC_03525 0.83 -0.8
708,235 - MCAODC_03525 0.83 +1.4
708,235 - MCAODC_03525 0.83 -1.4
708,235 - MCAODC_03525 0.83 -0.3
708,267 - -0.7
708,304 + -1.5
708,345 - -2.3
708,414 - -0.3

Or see this region's nucleotide sequence