Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_03150 and phnF are separated by 20 nucleotides phnF and phnG are separated by 0 nucleotides phnG and phnH overlap by 4 nucleotides phnH and phnI overlap by 1 nucleotides
MCAODC_03150: MCAODC_03150 - Phosphonate ABC transporter permease protein PhnE, at 635,988 to 636,767
_03150
MCAODC_03155: phnF - phosphonate metabolism transcriptional regulator PhnF, at 636,788 to 637,513
phnF
MCAODC_03160: phnG - phosphonate C-P lyase system protein PhnG, at 637,514 to 637,966
phnG
MCAODC_03165: phnH - phosphonate C-P lyase system protein PhnH, at 637,963 to 638,547
phnH
MCAODC_03170: phnI - alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI, at 638,547 to 639,611
phnI
Position (kb) 637
638 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 636.567 kb on + strand, within MCAODC_03150 at 636.568 kb on - strand, within MCAODC_03150 at 636.568 kb on - strand, within MCAODC_03150 at 636.708 kb on - strand at 636.708 kb on - strand at 636.761 kb on + strand at 636.762 kb on - strand at 636.770 kb on - strand at 636.783 kb on + strand at 636.783 kb on + strand at 636.783 kb on + strand at 636.783 kb on + strand at 636.783 kb on + strand at 636.784 kb on - strand at 636.784 kb on - strand at 636.784 kb on - strand at 636.784 kb on - strand at 636.784 kb on - strand at 636.784 kb on - strand at 636.784 kb on - strand at 636.787 kb on + strand at 636.788 kb on - strand at 636.788 kb on - strand at 636.788 kb on - strand at 636.788 kb on - strand at 636.788 kb on - strand at 636.788 kb on - strand at 636.887 kb on + strand, within phnF at 636.887 kb on + strand, within phnF at 636.888 kb on - strand, within phnF at 636.928 kb on - strand, within phnF at 636.928 kb on - strand, within phnF at 636.982 kb on - strand, within phnF at 636.982 kb on - strand, within phnF at 637.057 kb on + strand, within phnF at 637.058 kb on - strand, within phnF at 637.222 kb on - strand, within phnF at 637.232 kb on + strand, within phnF at 637.232 kb on + strand, within phnF at 637.232 kb on + strand, within phnF at 637.232 kb on + strand, within phnF at 637.232 kb on + strand, within phnF at 637.233 kb on - strand, within phnF at 637.396 kb on + strand, within phnF at 637.397 kb on - strand, within phnF at 637.460 kb on + strand at 637.502 kb on - strand at 637.555 kb on - strand at 637.619 kb on + strand, within phnG at 637.619 kb on + strand, within phnG at 637.619 kb on + strand, within phnG at 637.619 kb on + strand, within phnG at 637.620 kb on - strand, within phnG at 637.654 kb on - strand, within phnG at 637.729 kb on - strand, within phnG at 637.858 kb on + strand, within phnG at 637.858 kb on + strand, within phnG at 637.858 kb on + strand, within phnG at 637.882 kb on + strand, within phnG at 637.983 kb on + strand at 637.983 kb on + strand at 637.983 kb on + strand at 637.983 kb on + strand at 637.983 kb on + strand at 637.984 kb on - strand at 638.281 kb on - strand, within phnH at 638.388 kb on + strand, within phnH at 638.389 kb on - strand, within phnH at 638.550 kb on + strand at 638.550 kb on + strand at 638.550 kb on + strand at 638.550 kb on + strand at 638.550 kb on + strand at 638.551 kb on - strand at 638.551 kb on - strand at 638.551 kb on - strand at 638.551 kb on - strand at 638.551 kb on - strand at 638.551 kb on - strand at 638.551 kb on - strand at 638.669 kb on + strand, within phnI at 638.670 kb on - strand, within phnI at 638.858 kb on + strand, within phnI at 638.859 kb on - strand, within phnI at 638.873 kb on + strand, within phnI at 638.873 kb on + strand, within phnI at 638.874 kb on - strand, within phnI at 638.879 kb on + strand, within phnI at 638.879 kb on + strand, within phnI at 638.879 kb on + strand, within phnI at 638.879 kb on + strand, within phnI at 638.910 kb on + strand, within phnI at 638.910 kb on + strand, within phnI at 638.911 kb on - strand, within phnI at 638.916 kb on + strand, within phnI at 638.916 kb on + strand, within phnI at 638.916 kb on + strand, within phnI at 638.917 kb on - strand, within phnI at 638.917 kb on - strand, within phnI
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 636,567 + MCAODC_03150 0.74 +1.5 636,568 - MCAODC_03150 0.74 +0.2 636,568 - MCAODC_03150 0.74 +0.1 636,708 - -1.6 636,708 - +0.1 636,761 + +1.2 636,762 - +0.6 636,770 - -0.6 636,783 + +1.2 636,783 + +1.3 636,783 + +1.0 636,783 + +2.0 636,783 + +0.7 636,784 - +1.0 636,784 - -0.9 636,784 - +0.4 636,784 - +0.1 636,784 - +0.4 636,784 - -3.4 636,784 - +1.1 636,787 + +1.2 636,788 - +0.3 636,788 - +0.6 636,788 - +0.3 636,788 - +0.1 636,788 - +0.3 636,788 - +0.5 636,887 + phnF MCAODC_03155 0.14 +0.0 636,887 + phnF MCAODC_03155 0.14 -0.2 636,888 - phnF MCAODC_03155 0.14 +0.1 636,928 - phnF MCAODC_03155 0.19 +0.0 636,928 - phnF MCAODC_03155 0.19 -2.2 636,982 - phnF MCAODC_03155 0.27 -1.8 636,982 - phnF MCAODC_03155 0.27 -2.3 637,057 + phnF MCAODC_03155 0.37 +0.3 637,058 - phnF MCAODC_03155 0.37 -0.0 637,222 - phnF MCAODC_03155 0.60 +0.0 637,232 + phnF MCAODC_03155 0.61 -2.3 637,232 + phnF MCAODC_03155 0.61 +0.3 637,232 + phnF MCAODC_03155 0.61 -0.4 637,232 + phnF MCAODC_03155 0.61 -2.1 637,232 + phnF MCAODC_03155 0.61 -1.6 637,233 - phnF MCAODC_03155 0.61 -2.9 637,396 + phnF MCAODC_03155 0.84 -2.6 637,397 - phnF MCAODC_03155 0.84 -1.7 637,460 + +0.5 637,502 - -2.0 637,555 - -2.9 637,619 + phnG MCAODC_03160 0.23 +1.1 637,619 + phnG MCAODC_03160 0.23 +0.5 637,619 + phnG MCAODC_03160 0.23 +0.4 637,619 + phnG MCAODC_03160 0.23 -0.5 637,620 - phnG MCAODC_03160 0.23 -0.1 637,654 - phnG MCAODC_03160 0.31 +0.8 637,729 - phnG MCAODC_03160 0.47 -0.7 637,858 + phnG MCAODC_03160 0.76 -3.4 637,858 + phnG MCAODC_03160 0.76 +0.6 637,858 + phnG MCAODC_03160 0.76 +0.8 637,882 + phnG MCAODC_03160 0.81 -0.2 637,983 + -0.8 637,983 + +0.5 637,983 + +0.3 637,983 + +1.4 637,983 + +0.2 637,984 - +1.0 638,281 - phnH MCAODC_03165 0.54 +0.5 638,388 + phnH MCAODC_03165 0.73 +2.5 638,389 - phnH MCAODC_03165 0.73 -0.9 638,550 + +0.4 638,550 + +0.2 638,550 + -1.7 638,550 + +0.1 638,550 + +0.2 638,551 - +0.5 638,551 - -0.5 638,551 - +0.1 638,551 - +0.6 638,551 - +1.3 638,551 - -0.1 638,551 - -0.3 638,669 + phnI MCAODC_03170 0.11 +1.5 638,670 - phnI MCAODC_03170 0.12 +0.3 638,858 + phnI MCAODC_03170 0.29 +0.2 638,859 - phnI MCAODC_03170 0.29 -1.2 638,873 + phnI MCAODC_03170 0.31 +0.5 638,873 + phnI MCAODC_03170 0.31 -0.4 638,874 - phnI MCAODC_03170 0.31 -0.5 638,879 + phnI MCAODC_03170 0.31 +0.2 638,879 + phnI MCAODC_03170 0.31 -0.9 638,879 + phnI MCAODC_03170 0.31 -0.3 638,879 + phnI MCAODC_03170 0.31 -1.6 638,910 + phnI MCAODC_03170 0.34 +0.4 638,910 + phnI MCAODC_03170 0.34 +0.6 638,911 - phnI MCAODC_03170 0.34 -0.2 638,916 + phnI MCAODC_03170 0.35 +0.2 638,916 + phnI MCAODC_03170 0.35 +0.9 638,916 + phnI MCAODC_03170 0.35 +0.7 638,917 - phnI MCAODC_03170 0.35 +1.4 638,917 - phnI MCAODC_03170 0.35 +0.4
Or see this region's nucleotide sequence