Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjcZ and crfC overlap by 4 nucleotides crfC and yjdM are separated by 401 nucleotides yjdM and yjdN are separated by 258 nucleotides
MCAODC_03105: yjcZ - Uncharacterized protein YjcZ, at 629,378 to 630,256
yjcZ
MCAODC_03110: crfC - clamp-binding protein CrfC, at 630,253 to 632,481
crfC
MCAODC_03115: yjdM - Protein YjdM, at 632,883 to 633,218
yjdM
MCAODC_03130: yjdN - VOC family metalloprotein YjdN, at 633,477 to 633,920
yjdN
Position (kb) 630
631
632
633 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 629.255 kb on + strand at 629.255 kb on + strand at 629.290 kb on + strand at 629.376 kb on - strand at 629.379 kb on + strand at 629.506 kb on + strand, within yjcZ at 629.507 kb on - strand, within yjcZ at 629.507 kb on - strand, within yjcZ at 629.507 kb on - strand, within yjcZ at 629.507 kb on - strand, within yjcZ at 629.595 kb on + strand, within yjcZ at 629.595 kb on + strand, within yjcZ at 629.595 kb on + strand, within yjcZ at 629.596 kb on - strand, within yjcZ at 629.596 kb on - strand, within yjcZ at 629.598 kb on + strand, within yjcZ at 629.598 kb on + strand, within yjcZ at 629.599 kb on - strand, within yjcZ at 629.626 kb on + strand, within yjcZ at 629.626 kb on + strand, within yjcZ at 629.627 kb on - strand, within yjcZ at 629.627 kb on - strand, within yjcZ at 629.781 kb on + strand, within yjcZ at 629.781 kb on + strand, within yjcZ at 629.781 kb on + strand, within yjcZ at 629.781 kb on + strand, within yjcZ at 629.782 kb on - strand, within yjcZ at 629.898 kb on + strand, within yjcZ at 629.898 kb on + strand, within yjcZ at 629.899 kb on - strand, within yjcZ at 629.899 kb on - strand, within yjcZ at 629.899 kb on - strand, within yjcZ at 629.899 kb on - strand, within yjcZ at 629.899 kb on - strand, within yjcZ at 629.899 kb on - strand, within yjcZ at 629.899 kb on - strand, within yjcZ at 629.899 kb on - strand, within yjcZ at 630.055 kb on + strand, within yjcZ at 630.055 kb on + strand, within yjcZ at 630.056 kb on - strand, within yjcZ at 630.296 kb on - strand at 630.524 kb on + strand, within crfC at 630.525 kb on - strand, within crfC at 630.544 kb on + strand, within crfC at 630.566 kb on + strand, within crfC at 630.566 kb on + strand, within crfC at 630.655 kb on + strand, within crfC at 630.736 kb on + strand, within crfC at 630.736 kb on + strand, within crfC at 630.736 kb on + strand, within crfC at 630.736 kb on + strand, within crfC at 630.823 kb on - strand, within crfC at 630.823 kb on - strand, within crfC at 630.832 kb on + strand, within crfC at 630.876 kb on + strand, within crfC at 630.877 kb on - strand, within crfC at 630.910 kb on + strand, within crfC at 630.910 kb on + strand, within crfC at 630.910 kb on + strand, within crfC at 631.054 kb on - strand, within crfC at 631.090 kb on + strand, within crfC at 631.090 kb on + strand, within crfC at 631.090 kb on + strand, within crfC at 631.090 kb on + strand, within crfC at 631.091 kb on - strand, within crfC at 631.209 kb on + strand, within crfC at 631.210 kb on - strand, within crfC at 631.210 kb on - strand, within crfC at 631.232 kb on + strand, within crfC at 631.233 kb on - strand, within crfC at 631.233 kb on - strand, within crfC at 631.233 kb on - strand, within crfC at 631.233 kb on - strand, within crfC at 631.233 kb on - strand, within crfC at 631.233 kb on - strand, within crfC at 631.233 kb on - strand, within crfC at 631.233 kb on - strand, within crfC at 631.326 kb on + strand, within crfC at 631.326 kb on + strand, within crfC at 631.326 kb on + strand, within crfC at 631.326 kb on + strand, within crfC at 631.420 kb on + strand, within crfC at 631.420 kb on + strand, within crfC at 631.425 kb on + strand, within crfC at 631.425 kb on + strand, within crfC at 631.426 kb on - strand, within crfC at 631.466 kb on + strand, within crfC at 631.492 kb on + strand, within crfC at 631.493 kb on - strand, within crfC at 631.506 kb on + strand, within crfC at 631.506 kb on + strand, within crfC at 631.506 kb on + strand, within crfC at 631.507 kb on - strand, within crfC at 631.510 kb on - strand, within crfC at 631.510 kb on - strand, within crfC at 631.569 kb on + strand, within crfC at 631.570 kb on - strand, within crfC at 631.591 kb on - strand, within crfC at 631.604 kb on + strand, within crfC at 631.605 kb on - strand, within crfC at 631.605 kb on - strand, within crfC at 631.605 kb on - strand, within crfC at 631.605 kb on - strand, within crfC at 631.605 kb on - strand, within crfC at 631.677 kb on + strand, within crfC at 631.677 kb on + strand, within crfC at 631.677 kb on + strand, within crfC at 631.677 kb on + strand, within crfC at 631.678 kb on - strand, within crfC at 631.678 kb on - strand, within crfC at 631.679 kb on + strand, within crfC at 631.781 kb on - strand, within crfC at 631.849 kb on - strand, within crfC at 631.866 kb on - strand, within crfC at 631.964 kb on + strand, within crfC at 632.002 kb on - strand, within crfC at 632.020 kb on - strand, within crfC at 632.049 kb on + strand, within crfC at 632.050 kb on - strand, within crfC at 632.125 kb on + strand, within crfC at 632.157 kb on + strand, within crfC at 632.193 kb on + strand, within crfC at 632.193 kb on + strand, within crfC at 632.331 kb on + strand at 632.350 kb on + strand at 632.351 kb on - strand at 632.456 kb on - strand at 632.463 kb on - strand at 632.477 kb on + strand at 632.477 kb on + strand at 632.478 kb on - strand at 632.517 kb on + strand at 632.517 kb on + strand at 632.610 kb on - strand at 632.682 kb on - strand at 632.695 kb on + strand at 632.812 kb on + strand at 632.813 kb on - strand at 632.919 kb on + strand, within yjdM at 632.925 kb on + strand, within yjdM at 632.925 kb on + strand, within yjdM at 632.925 kb on + strand, within yjdM at 632.926 kb on - strand, within yjdM at 632.943 kb on + strand, within yjdM at 632.943 kb on + strand, within yjdM at 632.943 kb on + strand, within yjdM at 632.943 kb on + strand, within yjdM at 632.943 kb on + strand, within yjdM at 632.943 kb on + strand, within yjdM at 632.943 kb on + strand, within yjdM at 632.943 kb on + strand, within yjdM at 632.944 kb on - strand, within yjdM at 632.944 kb on - strand, within yjdM at 632.944 kb on - strand, within yjdM at 632.944 kb on - strand, within yjdM at 632.944 kb on - strand, within yjdM at 632.944 kb on - strand, within yjdM at 632.944 kb on - strand, within yjdM at 632.944 kb on - strand, within yjdM at 632.944 kb on - strand, within yjdM at 632.944 kb on - strand, within yjdM at 632.944 kb on - strand, within yjdM at 632.965 kb on - strand, within yjdM at 633.014 kb on + strand, within yjdM at 633.024 kb on - strand, within yjdM at 633.087 kb on - strand, within yjdM at 633.087 kb on - strand, within yjdM at 633.150 kb on - strand, within yjdM at 633.222 kb on + strand at 633.222 kb on + strand at 633.222 kb on + strand at 633.223 kb on - strand at 633.223 kb on - strand at 633.253 kb on - strand at 633.304 kb on + strand at 633.313 kb on + strand at 633.446 kb on + strand at 633.460 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 629,255 + -0.5 629,255 + -0.3 629,290 + -0.7 629,376 - -0.1 629,379 + +1.7 629,506 + yjcZ MCAODC_03105 0.15 +0.8 629,507 - yjcZ MCAODC_03105 0.15 -0.0 629,507 - yjcZ MCAODC_03105 0.15 -1.4 629,507 - yjcZ MCAODC_03105 0.15 +0.4 629,507 - yjcZ MCAODC_03105 0.15 -0.6 629,595 + yjcZ MCAODC_03105 0.25 -0.7 629,595 + yjcZ MCAODC_03105 0.25 -0.5 629,595 + yjcZ MCAODC_03105 0.25 -0.2 629,596 - yjcZ MCAODC_03105 0.25 -0.3 629,596 - yjcZ MCAODC_03105 0.25 +2.1 629,598 + yjcZ MCAODC_03105 0.25 -0.3 629,598 + yjcZ MCAODC_03105 0.25 +0.5 629,599 - yjcZ MCAODC_03105 0.25 -0.9 629,626 + yjcZ MCAODC_03105 0.28 -0.5 629,626 + yjcZ MCAODC_03105 0.28 +1.1 629,627 - yjcZ MCAODC_03105 0.28 +1.3 629,627 - yjcZ MCAODC_03105 0.28 -1.4 629,781 + yjcZ MCAODC_03105 0.46 -1.9 629,781 + yjcZ MCAODC_03105 0.46 +0.3 629,781 + yjcZ MCAODC_03105 0.46 +0.8 629,781 + yjcZ MCAODC_03105 0.46 -0.1 629,782 - yjcZ MCAODC_03105 0.46 +0.1 629,898 + yjcZ MCAODC_03105 0.59 -0.3 629,898 + yjcZ MCAODC_03105 0.59 -0.3 629,899 - yjcZ MCAODC_03105 0.59 +0.1 629,899 - yjcZ MCAODC_03105 0.59 +0.3 629,899 - yjcZ MCAODC_03105 0.59 +1.0 629,899 - yjcZ MCAODC_03105 0.59 -0.8 629,899 - yjcZ MCAODC_03105 0.59 -0.6 629,899 - yjcZ MCAODC_03105 0.59 -1.0 629,899 - yjcZ MCAODC_03105 0.59 -0.6 629,899 - yjcZ MCAODC_03105 0.59 +0.8 630,055 + yjcZ MCAODC_03105 0.77 +0.2 630,055 + yjcZ MCAODC_03105 0.77 +0.0 630,056 - yjcZ MCAODC_03105 0.77 +0.5 630,296 - -0.4 630,524 + crfC MCAODC_03110 0.12 +0.3 630,525 - crfC MCAODC_03110 0.12 -0.1 630,544 + crfC MCAODC_03110 0.13 -1.9 630,566 + crfC MCAODC_03110 0.14 +1.1 630,566 + crfC MCAODC_03110 0.14 +0.2 630,655 + crfC MCAODC_03110 0.18 -1.9 630,736 + crfC MCAODC_03110 0.22 +1.0 630,736 + crfC MCAODC_03110 0.22 -2.6 630,736 + crfC MCAODC_03110 0.22 -1.5 630,736 + crfC MCAODC_03110 0.22 -0.5 630,823 - crfC MCAODC_03110 0.26 -0.2 630,823 - crfC MCAODC_03110 0.26 -1.5 630,832 + crfC MCAODC_03110 0.26 -0.1 630,876 + crfC MCAODC_03110 0.28 -2.6 630,877 - crfC MCAODC_03110 0.28 +0.1 630,910 + crfC MCAODC_03110 0.29 +0.3 630,910 + crfC MCAODC_03110 0.29 +0.1 630,910 + crfC MCAODC_03110 0.29 +0.5 631,054 - crfC MCAODC_03110 0.36 -0.0 631,090 + crfC MCAODC_03110 0.38 -0.6 631,090 + crfC MCAODC_03110 0.38 +0.3 631,090 + crfC MCAODC_03110 0.38 -0.2 631,090 + crfC MCAODC_03110 0.38 +0.6 631,091 - crfC MCAODC_03110 0.38 -2.4 631,209 + crfC MCAODC_03110 0.43 -0.4 631,210 - crfC MCAODC_03110 0.43 +1.1 631,210 - crfC MCAODC_03110 0.43 +0.4 631,232 + crfC MCAODC_03110 0.44 +0.3 631,233 - crfC MCAODC_03110 0.44 +1.0 631,233 - crfC MCAODC_03110 0.44 +0.1 631,233 - crfC MCAODC_03110 0.44 -0.2 631,233 - crfC MCAODC_03110 0.44 +1.0 631,233 - crfC MCAODC_03110 0.44 -0.1 631,233 - crfC MCAODC_03110 0.44 +0.1 631,233 - crfC MCAODC_03110 0.44 +0.3 631,233 - crfC MCAODC_03110 0.44 -0.1 631,326 + crfC MCAODC_03110 0.48 +0.5 631,326 + crfC MCAODC_03110 0.48 -0.6 631,326 + crfC MCAODC_03110 0.48 +0.2 631,326 + crfC MCAODC_03110 0.48 +0.3 631,420 + crfC MCAODC_03110 0.52 +0.1 631,420 + crfC MCAODC_03110 0.52 -1.2 631,425 + crfC MCAODC_03110 0.53 +1.1 631,425 + crfC MCAODC_03110 0.53 -0.1 631,426 - crfC MCAODC_03110 0.53 +0.4 631,466 + crfC MCAODC_03110 0.54 +0.4 631,492 + crfC MCAODC_03110 0.56 +0.9 631,493 - crfC MCAODC_03110 0.56 +0.0 631,506 + crfC MCAODC_03110 0.56 -0.1 631,506 + crfC MCAODC_03110 0.56 -0.1 631,506 + crfC MCAODC_03110 0.56 +1.2 631,507 - crfC MCAODC_03110 0.56 +0.6 631,510 - crfC MCAODC_03110 0.56 -0.8 631,510 - crfC MCAODC_03110 0.56 +1.1 631,569 + crfC MCAODC_03110 0.59 +0.8 631,570 - crfC MCAODC_03110 0.59 -0.4 631,591 - crfC MCAODC_03110 0.60 -0.8 631,604 + crfC MCAODC_03110 0.61 +0.5 631,605 - crfC MCAODC_03110 0.61 +0.8 631,605 - crfC MCAODC_03110 0.61 -3.4 631,605 - crfC MCAODC_03110 0.61 -0.8 631,605 - crfC MCAODC_03110 0.61 -1.5 631,605 - crfC MCAODC_03110 0.61 -0.9 631,677 + crfC MCAODC_03110 0.64 -1.6 631,677 + crfC MCAODC_03110 0.64 +0.9 631,677 + crfC MCAODC_03110 0.64 +0.1 631,677 + crfC MCAODC_03110 0.64 -0.7 631,678 - crfC MCAODC_03110 0.64 -1.0 631,678 - crfC MCAODC_03110 0.64 -0.4 631,679 + crfC MCAODC_03110 0.64 +0.1 631,781 - crfC MCAODC_03110 0.69 +0.5 631,849 - crfC MCAODC_03110 0.72 +0.6 631,866 - crfC MCAODC_03110 0.72 +1.0 631,964 + crfC MCAODC_03110 0.77 -0.6 632,002 - crfC MCAODC_03110 0.78 +1.4 632,020 - crfC MCAODC_03110 0.79 -0.1 632,049 + crfC MCAODC_03110 0.81 -0.2 632,050 - crfC MCAODC_03110 0.81 -0.2 632,125 + crfC MCAODC_03110 0.84 -0.7 632,157 + crfC MCAODC_03110 0.85 +0.0 632,193 + crfC MCAODC_03110 0.87 -0.5 632,193 + crfC MCAODC_03110 0.87 -3.2 632,331 + +0.3 632,350 + -0.6 632,351 - -0.5 632,456 - +0.2 632,463 - +0.4 632,477 + -0.9 632,477 + -0.4 632,478 - -1.0 632,517 + -0.2 632,517 + +0.5 632,610 - -0.5 632,682 - +0.7 632,695 + +1.4 632,812 + -1.3 632,813 - +0.3 632,919 + yjdM MCAODC_03115 0.11 +1.4 632,925 + yjdM MCAODC_03115 0.12 +2.1 632,925 + yjdM MCAODC_03115 0.12 +0.8 632,925 + yjdM MCAODC_03115 0.12 +0.3 632,926 - yjdM MCAODC_03115 0.13 +1.1 632,943 + yjdM MCAODC_03115 0.18 +0.2 632,943 + yjdM MCAODC_03115 0.18 -1.4 632,943 + yjdM MCAODC_03115 0.18 +0.8 632,943 + yjdM MCAODC_03115 0.18 +0.8 632,943 + yjdM MCAODC_03115 0.18 +1.0 632,943 + yjdM MCAODC_03115 0.18 +0.3 632,943 + yjdM MCAODC_03115 0.18 +0.8 632,943 + yjdM MCAODC_03115 0.18 +1.8 632,944 - yjdM MCAODC_03115 0.18 +0.9 632,944 - yjdM MCAODC_03115 0.18 +1.3 632,944 - yjdM MCAODC_03115 0.18 +1.6 632,944 - yjdM MCAODC_03115 0.18 +0.8 632,944 - yjdM MCAODC_03115 0.18 -0.3 632,944 - yjdM MCAODC_03115 0.18 +0.3 632,944 - yjdM MCAODC_03115 0.18 -0.5 632,944 - yjdM MCAODC_03115 0.18 -0.3 632,944 - yjdM MCAODC_03115 0.18 -1.3 632,944 - yjdM MCAODC_03115 0.18 -1.8 632,944 - yjdM MCAODC_03115 0.18 +0.5 632,965 - yjdM MCAODC_03115 0.24 -0.7 633,014 + yjdM MCAODC_03115 0.39 +0.3 633,024 - yjdM MCAODC_03115 0.42 +0.7 633,087 - yjdM MCAODC_03115 0.61 -0.1 633,087 - yjdM MCAODC_03115 0.61 -0.7 633,150 - yjdM MCAODC_03115 0.79 +0.7 633,222 + -0.0 633,222 + -0.4 633,222 + +0.5 633,223 - +2.1 633,223 - -1.6 633,253 - -2.0 633,304 + +0.9 633,313 + +1.1 633,446 + -0.2 633,460 + -0.7
Or see this region's nucleotide sequence