Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_02255 and MCAODC_02260 are separated by 121 nucleotides MCAODC_02260 and MCAODC_02265 are separated by 126 nucleotides
MCAODC_02255: MCAODC_02255 - NIPSNAP family protein, at 464,067 to 464,399
_02255
MCAODC_02260: MCAODC_02260 - DUF4160 domain-containing protein, at 464,521 to 464,898
_02260
MCAODC_02265: MCAODC_02265 - integrase, at 465,025 to 466,944
_02265
Position (kb) 464
465 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 463.105 kb on - strand at 463.105 kb on - strand at 463.106 kb on + strand at 463.106 kb on + strand at 463.108 kb on + strand at 463.156 kb on + strand at 463.157 kb on - strand at 463.183 kb on - strand at 463.234 kb on + strand at 463.249 kb on + strand at 463.250 kb on - strand at 463.296 kb on + strand at 463.296 kb on + strand at 463.296 kb on + strand at 463.296 kb on + strand at 463.296 kb on + strand at 463.297 kb on - strand at 463.297 kb on - strand at 463.314 kb on + strand at 463.314 kb on + strand at 463.314 kb on + strand at 463.315 kb on - strand at 463.315 kb on - strand at 463.315 kb on - strand at 463.315 kb on - strand at 463.319 kb on - strand at 463.319 kb on - strand at 463.334 kb on + strand at 463.334 kb on + strand at 463.334 kb on + strand at 463.334 kb on + strand at 463.335 kb on - strand at 463.335 kb on - strand at 463.335 kb on - strand at 463.411 kb on + strand at 463.412 kb on - strand at 463.412 kb on - strand at 463.418 kb on + strand at 463.418 kb on + strand at 463.418 kb on + strand at 463.437 kb on - strand at 463.437 kb on - strand at 463.445 kb on + strand at 463.445 kb on + strand at 463.445 kb on + strand at 463.445 kb on + strand at 463.445 kb on + strand at 463.446 kb on - strand at 463.446 kb on - strand at 463.446 kb on - strand at 463.446 kb on - strand at 463.446 kb on - strand at 463.475 kb on + strand at 463.475 kb on + strand at 463.475 kb on + strand at 463.475 kb on + strand at 463.476 kb on - strand at 463.483 kb on - strand at 463.495 kb on - strand at 463.518 kb on - strand at 463.518 kb on - strand at 463.543 kb on - strand at 463.562 kb on + strand at 463.641 kb on + strand at 463.641 kb on + strand at 463.642 kb on - strand at 463.642 kb on - strand at 463.642 kb on - strand at 463.642 kb on - strand at 463.683 kb on + strand at 463.684 kb on - strand at 463.684 kb on - strand at 463.704 kb on + strand at 463.704 kb on + strand at 463.705 kb on - strand at 463.705 kb on - strand at 463.747 kb on + strand at 463.747 kb on + strand at 463.748 kb on - strand at 463.750 kb on - strand at 463.750 kb on - strand at 463.933 kb on - strand at 463.933 kb on - strand at 463.933 kb on - strand at 463.952 kb on + strand at 463.969 kb on - strand at 463.986 kb on + strand at 463.993 kb on - strand at 463.993 kb on - strand at 464.015 kb on + strand at 464.016 kb on - strand at 464.020 kb on + strand at 464.021 kb on - strand at 464.021 kb on - strand at 464.034 kb on - strand at 464.034 kb on - strand at 464.034 kb on - strand at 464.034 kb on - strand at 464.034 kb on - strand at 464.034 kb on - strand at 464.061 kb on + strand at 464.084 kb on - strand at 464.091 kb on + strand at 464.091 kb on + strand at 464.091 kb on + strand at 464.091 kb on + strand at 464.091 kb on + strand at 464.091 kb on + strand at 464.091 kb on + strand at 464.092 kb on - strand at 464.092 kb on - strand at 464.092 kb on - strand at 464.092 kb on - strand at 464.131 kb on + strand, within MCAODC_02255 at 464.131 kb on + strand, within MCAODC_02255 at 464.131 kb on + strand, within MCAODC_02255 at 464.155 kb on + strand, within MCAODC_02255 at 464.217 kb on + strand, within MCAODC_02255 at 464.217 kb on + strand, within MCAODC_02255 at 464.217 kb on + strand, within MCAODC_02255 at 464.218 kb on - strand, within MCAODC_02255 at 464.218 kb on - strand, within MCAODC_02255 at 464.218 kb on - strand, within MCAODC_02255 at 464.218 kb on - strand, within MCAODC_02255 at 464.220 kb on + strand, within MCAODC_02255 at 464.220 kb on + strand, within MCAODC_02255 at 464.220 kb on + strand, within MCAODC_02255 at 464.221 kb on - strand, within MCAODC_02255 at 464.221 kb on - strand, within MCAODC_02255 at 464.342 kb on + strand, within MCAODC_02255 at 464.343 kb on - strand, within MCAODC_02255 at 464.360 kb on - strand, within MCAODC_02255 at 464.397 kb on + strand at 464.398 kb on - strand at 464.398 kb on - strand at 464.398 kb on - strand at 464.398 kb on - strand at 464.401 kb on + strand at 464.401 kb on + strand at 464.401 kb on + strand at 464.401 kb on + strand at 464.401 kb on + strand at 464.401 kb on + strand at 464.411 kb on + strand at 464.412 kb on - strand at 464.412 kb on - strand at 464.412 kb on - strand at 464.414 kb on + strand at 464.414 kb on + strand at 464.414 kb on + strand at 464.414 kb on + strand at 464.419 kb on + strand at 464.430 kb on + strand at 464.430 kb on + strand at 464.431 kb on - strand at 464.456 kb on + strand at 464.468 kb on - strand at 464.490 kb on + strand at 464.494 kb on + strand at 464.494 kb on + strand at 464.494 kb on + strand at 464.494 kb on + strand at 464.494 kb on + strand at 464.495 kb on - strand at 464.495 kb on - strand at 464.497 kb on + strand at 464.497 kb on + strand at 464.518 kb on + strand at 464.519 kb on - strand at 464.519 kb on - strand at 464.519 kb on - strand at 464.519 kb on - strand at 464.519 kb on - strand at 464.519 kb on - strand at 464.519 kb on - strand at 464.519 kb on - strand at 464.520 kb on + strand at 464.521 kb on - strand at 464.521 kb on - strand at 464.528 kb on + strand at 464.529 kb on - strand at 464.576 kb on + strand, within MCAODC_02260 at 464.577 kb on - strand, within MCAODC_02260 at 464.598 kb on + strand, within MCAODC_02260 at 464.599 kb on - strand, within MCAODC_02260 at 464.651 kb on + strand, within MCAODC_02260 at 464.657 kb on + strand, within MCAODC_02260 at 464.657 kb on + strand, within MCAODC_02260 at 464.657 kb on + strand, within MCAODC_02260 at 464.657 kb on + strand, within MCAODC_02260 at 464.658 kb on - strand, within MCAODC_02260 at 464.694 kb on + strand, within MCAODC_02260 at 464.728 kb on + strand, within MCAODC_02260 at 464.729 kb on - strand, within MCAODC_02260 at 464.766 kb on - strand, within MCAODC_02260 at 464.766 kb on - strand, within MCAODC_02260 at 464.776 kb on + strand, within MCAODC_02260 at 464.776 kb on + strand, within MCAODC_02260 at 464.777 kb on - strand, within MCAODC_02260 at 464.777 kb on - strand, within MCAODC_02260 at 464.782 kb on - strand, within MCAODC_02260 at 464.843 kb on + strand, within MCAODC_02260 at 464.860 kb on + strand, within MCAODC_02260 at 464.860 kb on + strand, within MCAODC_02260 at 464.870 kb on + strand at 464.909 kb on - strand at 464.942 kb on + strand at 464.945 kb on - strand at 464.946 kb on + strand at 464.946 kb on + strand at 464.947 kb on - strand at 464.947 kb on - strand at 464.947 kb on - strand at 464.948 kb on + strand at 464.948 kb on + strand at 464.948 kb on + strand at 464.948 kb on + strand at 464.948 kb on + strand at 464.948 kb on + strand at 464.948 kb on + strand at 464.948 kb on + strand at 464.948 kb on + strand at 464.948 kb on + strand at 464.949 kb on - strand at 464.949 kb on - strand at 464.949 kb on - strand at 464.949 kb on - strand at 464.952 kb on + strand at 464.952 kb on + strand at 464.952 kb on + strand at 464.953 kb on - strand at 464.993 kb on + strand at 464.994 kb on - strand at 464.994 kb on - strand at 465.005 kb on + strand at 465.005 kb on + strand at 465.006 kb on - strand at 465.006 kb on - strand at 465.006 kb on - strand at 465.037 kb on + strand at 465.130 kb on + strand at 465.143 kb on + strand at 465.184 kb on + strand at 465.207 kb on + strand at 465.207 kb on + strand at 465.207 kb on + strand at 465.207 kb on + strand at 465.208 kb on - strand at 465.339 kb on - strand, within MCAODC_02265 at 465.352 kb on - strand, within MCAODC_02265 at 465.360 kb on + strand, within MCAODC_02265 at 465.383 kb on + strand, within MCAODC_02265
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 463,105 - +0.8 463,105 - -0.3 463,106 + -0.3 463,106 + +0.5 463,108 + -0.2 463,156 + +1.3 463,157 - -0.1 463,183 - +1.1 463,234 + +0.7 463,249 + +1.0 463,250 - +0.2 463,296 + +1.5 463,296 + -2.5 463,296 + +0.4 463,296 + +0.8 463,296 + +0.0 463,297 - -1.1 463,297 - +2.7 463,314 + -0.4 463,314 + +0.8 463,314 + +0.3 463,315 - -0.3 463,315 - +0.4 463,315 - +0.6 463,315 - +0.1 463,319 - +0.9 463,319 - +2.4 463,334 + +1.0 463,334 + +0.1 463,334 + -0.5 463,334 + -0.8 463,335 - -0.7 463,335 - -1.4 463,335 - +0.0 463,411 + +0.6 463,412 - -1.9 463,412 - +0.4 463,418 + +0.3 463,418 + +0.5 463,418 + +1.2 463,437 - +1.4 463,437 - +0.1 463,445 + +0.2 463,445 + +0.5 463,445 + -2.0 463,445 + -0.7 463,445 + -0.1 463,446 - -0.7 463,446 - +0.4 463,446 - -1.3 463,446 - +0.1 463,446 - -0.0 463,475 + -0.4 463,475 + -0.0 463,475 + +1.0 463,475 + +1.8 463,476 - +0.1 463,483 - +1.6 463,495 - +0.2 463,518 - -1.2 463,518 - +0.2 463,543 - -0.8 463,562 + -0.3 463,641 + +1.0 463,641 + +0.9 463,642 - +0.6 463,642 - -3.3 463,642 - -1.8 463,642 - +1.5 463,683 + +0.3 463,684 - +1.0 463,684 - +0.4 463,704 + +0.1 463,704 + -0.2 463,705 - +1.1 463,705 - +0.4 463,747 + -1.8 463,747 + -0.0 463,748 - -0.3 463,750 - -0.2 463,750 - -0.2 463,933 - +0.0 463,933 - +0.6 463,933 - -0.1 463,952 + +0.1 463,969 - +0.4 463,986 + -1.5 463,993 - +0.7 463,993 - +1.3 464,015 + -3.4 464,016 - -0.6 464,020 + +1.4 464,021 - +0.3 464,021 - -0.7 464,034 - +1.2 464,034 - +0.0 464,034 - -0.2 464,034 - +0.5 464,034 - -0.3 464,034 - +1.6 464,061 + +1.3 464,084 - -2.1 464,091 + -0.6 464,091 + +0.0 464,091 + +1.5 464,091 + +0.8 464,091 + -1.0 464,091 + -0.2 464,091 + -0.2 464,092 - +0.4 464,092 - +0.7 464,092 - +2.6 464,092 - -0.2 464,131 + MCAODC_02255 0.19 +0.4 464,131 + MCAODC_02255 0.19 +0.2 464,131 + MCAODC_02255 0.19 +0.5 464,155 + MCAODC_02255 0.26 +1.1 464,217 + MCAODC_02255 0.45 +0.6 464,217 + MCAODC_02255 0.45 +0.2 464,217 + MCAODC_02255 0.45 -0.4 464,218 - MCAODC_02255 0.45 +0.2 464,218 - MCAODC_02255 0.45 +0.3 464,218 - MCAODC_02255 0.45 +0.3 464,218 - MCAODC_02255 0.45 -0.7 464,220 + MCAODC_02255 0.46 +0.1 464,220 + MCAODC_02255 0.46 +1.4 464,220 + MCAODC_02255 0.46 +0.9 464,221 - MCAODC_02255 0.46 -1.2 464,221 - MCAODC_02255 0.46 -0.6 464,342 + MCAODC_02255 0.83 -2.1 464,343 - MCAODC_02255 0.83 -0.2 464,360 - MCAODC_02255 0.88 -0.3 464,397 + +0.4 464,398 - +0.5 464,398 - +0.2 464,398 - +0.7 464,398 - -1.0 464,401 + +0.5 464,401 + +1.0 464,401 + -1.5 464,401 + -0.0 464,401 + +1.5 464,401 + +0.5 464,411 + -0.4 464,412 - +0.3 464,412 - -1.0 464,412 - +0.6 464,414 + +0.1 464,414 + -0.6 464,414 + +0.5 464,414 + +0.3 464,419 + +0.2 464,430 + -0.5 464,430 + +0.2 464,431 - +0.5 464,456 + +0.2 464,468 - +0.3 464,490 + +0.4 464,494 + -1.2 464,494 + +0.8 464,494 + -0.2 464,494 + -0.9 464,494 + +0.8 464,495 - +0.3 464,495 - +0.9 464,497 + -0.7 464,497 + -2.1 464,518 + +0.1 464,519 - +0.1 464,519 - +0.1 464,519 - +0.1 464,519 - -1.8 464,519 - +0.3 464,519 - +0.0 464,519 - +0.8 464,519 - +0.1 464,520 + +0.6 464,521 - +1.6 464,521 - +1.8 464,528 + +0.2 464,529 - +2.3 464,576 + MCAODC_02260 0.15 +0.2 464,577 - MCAODC_02260 0.15 +0.9 464,598 + MCAODC_02260 0.20 +0.6 464,599 - MCAODC_02260 0.21 +0.3 464,651 + MCAODC_02260 0.34 +1.0 464,657 + MCAODC_02260 0.36 +1.1 464,657 + MCAODC_02260 0.36 +0.3 464,657 + MCAODC_02260 0.36 +0.5 464,657 + MCAODC_02260 0.36 -1.3 464,658 - MCAODC_02260 0.36 -1.0 464,694 + MCAODC_02260 0.46 -0.6 464,728 + MCAODC_02260 0.55 -0.1 464,729 - MCAODC_02260 0.55 +0.3 464,766 - MCAODC_02260 0.65 -1.9 464,766 - MCAODC_02260 0.65 -0.2 464,776 + MCAODC_02260 0.67 +0.1 464,776 + MCAODC_02260 0.67 -0.0 464,777 - MCAODC_02260 0.68 +1.0 464,777 - MCAODC_02260 0.68 +1.1 464,782 - MCAODC_02260 0.69 -3.0 464,843 + MCAODC_02260 0.85 -0.3 464,860 + MCAODC_02260 0.90 +0.0 464,860 + MCAODC_02260 0.90 +1.1 464,870 + +0.2 464,909 - -1.2 464,942 + -0.2 464,945 - -0.4 464,946 + -0.1 464,946 + -0.4 464,947 - -0.8 464,947 - +0.4 464,947 - -0.5 464,948 + -0.8 464,948 + +1.0 464,948 + -0.8 464,948 + +0.9 464,948 + +0.1 464,948 + -0.2 464,948 + +0.7 464,948 + +0.4 464,948 + +0.2 464,948 + +0.7 464,949 - +0.6 464,949 - -0.3 464,949 - -0.9 464,949 - -0.4 464,952 + -1.1 464,952 + +2.2 464,952 + -0.3 464,953 - +1.2 464,993 + +0.4 464,994 - -0.2 464,994 - -2.2 465,005 + +0.8 465,005 + -0.6 465,006 - -0.9 465,006 - -0.6 465,006 - +0.9 465,037 + -1.1 465,130 + +1.4 465,143 + +0.2 465,184 + -0.2 465,207 + -2.3 465,207 + -1.3 465,207 + -0.5 465,207 + +0.6 465,208 - +0.8 465,339 - MCAODC_02265 0.16 +0.2 465,352 - MCAODC_02265 0.17 -0.2 465,360 + MCAODC_02265 0.17 +0.4 465,383 + MCAODC_02265 0.19 +0.4
Or see this region's nucleotide sequence