Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_02240 and spoIVCA are separated by 198 nucleotides spoIVCA and MCAODC_02250 are separated by 192 nucleotides
MCAODC_02240: MCAODC_02240 - hypothetical protein, at 460,319 to 461,635
_02240
MCAODC_02245: spoIVCA - resolvase, at 461,834 to 462,403
spoIVCA
MCAODC_02250: MCAODC_02250 - DUF1643 domain-containing protein, at 462,596 to 463,063
_02250
Position (kb) 462
463
464 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 461.598 kb on + strand at 461.599 kb on - strand at 461.671 kb on + strand at 461.672 kb on - strand at 461.674 kb on - strand at 461.732 kb on + strand at 461.732 kb on + strand at 461.733 kb on - strand at 461.791 kb on + strand at 461.792 kb on - strand at 461.792 kb on - strand at 461.792 kb on - strand at 461.814 kb on + strand at 461.826 kb on + strand at 461.826 kb on + strand at 461.827 kb on - strand at 461.827 kb on - strand at 461.830 kb on + strand at 461.831 kb on - strand at 461.832 kb on + strand at 461.883 kb on + strand at 461.884 kb on - strand at 462.016 kb on + strand, within spoIVCA at 462.016 kb on + strand, within spoIVCA at 462.062 kb on + strand, within spoIVCA at 462.127 kb on + strand, within spoIVCA at 462.212 kb on + strand, within spoIVCA at 462.293 kb on + strand, within spoIVCA at 462.293 kb on + strand, within spoIVCA at 462.294 kb on - strand, within spoIVCA at 462.294 kb on - strand, within spoIVCA at 462.294 kb on - strand, within spoIVCA at 462.397 kb on + strand at 462.398 kb on - strand at 462.403 kb on + strand at 462.403 kb on + strand at 462.403 kb on + strand at 462.404 kb on - strand at 462.404 kb on - strand at 462.448 kb on + strand at 462.448 kb on + strand at 462.449 kb on - strand at 462.476 kb on + strand at 462.477 kb on - strand at 462.542 kb on - strand at 462.561 kb on + strand at 462.583 kb on - strand at 462.602 kb on - strand at 462.602 kb on - strand at 462.628 kb on + strand at 462.629 kb on - strand at 462.633 kb on - strand at 462.674 kb on + strand, within MCAODC_02250 at 462.687 kb on + strand, within MCAODC_02250 at 462.694 kb on - strand, within MCAODC_02250 at 462.704 kb on + strand, within MCAODC_02250 at 462.704 kb on + strand, within MCAODC_02250 at 462.704 kb on + strand, within MCAODC_02250 at 462.705 kb on - strand, within MCAODC_02250 at 462.705 kb on - strand, within MCAODC_02250 at 462.705 kb on - strand, within MCAODC_02250 at 462.747 kb on + strand, within MCAODC_02250 at 462.770 kb on + strand, within MCAODC_02250 at 462.780 kb on + strand, within MCAODC_02250 at 462.781 kb on - strand, within MCAODC_02250 at 462.781 kb on - strand, within MCAODC_02250 at 462.782 kb on + strand, within MCAODC_02250 at 462.782 kb on + strand, within MCAODC_02250 at 462.782 kb on + strand, within MCAODC_02250 at 462.782 kb on + strand, within MCAODC_02250 at 462.782 kb on + strand, within MCAODC_02250 at 462.782 kb on + strand, within MCAODC_02250 at 462.782 kb on + strand, within MCAODC_02250 at 462.782 kb on + strand, within MCAODC_02250 at 462.782 kb on + strand, within MCAODC_02250 at 462.782 kb on + strand, within MCAODC_02250 at 462.782 kb on + strand, within MCAODC_02250 at 462.783 kb on - strand, within MCAODC_02250 at 462.783 kb on - strand, within MCAODC_02250 at 462.783 kb on - strand, within MCAODC_02250 at 462.783 kb on - strand, within MCAODC_02250 at 462.783 kb on - strand, within MCAODC_02250 at 462.783 kb on - strand, within MCAODC_02250 at 462.876 kb on + strand, within MCAODC_02250 at 462.877 kb on - strand, within MCAODC_02250 at 462.964 kb on - strand, within MCAODC_02250 at 463.025 kb on + strand at 463.025 kb on + strand at 463.025 kb on + strand at 463.025 kb on + strand at 463.026 kb on - strand at 463.026 kb on - strand at 463.026 kb on - strand at 463.026 kb on - strand at 463.026 kb on - strand at 463.026 kb on - strand at 463.026 kb on - strand at 463.026 kb on - strand at 463.027 kb on + strand at 463.050 kb on + strand at 463.062 kb on - strand at 463.105 kb on - strand at 463.105 kb on - strand at 463.106 kb on + strand at 463.106 kb on + strand at 463.108 kb on + strand at 463.156 kb on + strand at 463.157 kb on - strand at 463.183 kb on - strand at 463.234 kb on + strand at 463.249 kb on + strand at 463.250 kb on - strand at 463.296 kb on + strand at 463.296 kb on + strand at 463.296 kb on + strand at 463.296 kb on + strand at 463.296 kb on + strand at 463.297 kb on - strand at 463.297 kb on - strand at 463.314 kb on + strand at 463.314 kb on + strand at 463.314 kb on + strand at 463.315 kb on - strand at 463.315 kb on - strand at 463.315 kb on - strand at 463.315 kb on - strand at 463.319 kb on - strand at 463.319 kb on - strand at 463.334 kb on + strand at 463.334 kb on + strand at 463.334 kb on + strand at 463.334 kb on + strand at 463.335 kb on - strand at 463.335 kb on - strand at 463.335 kb on - strand at 463.411 kb on + strand at 463.412 kb on - strand at 463.412 kb on - strand at 463.418 kb on + strand at 463.418 kb on + strand at 463.418 kb on + strand at 463.437 kb on - strand at 463.437 kb on - strand at 463.445 kb on + strand at 463.445 kb on + strand at 463.445 kb on + strand at 463.445 kb on + strand at 463.445 kb on + strand at 463.446 kb on - strand at 463.446 kb on - strand at 463.446 kb on - strand at 463.446 kb on - strand at 463.446 kb on - strand at 463.475 kb on + strand at 463.475 kb on + strand at 463.475 kb on + strand at 463.475 kb on + strand at 463.476 kb on - strand at 463.483 kb on - strand at 463.495 kb on - strand at 463.518 kb on - strand at 463.518 kb on - strand at 463.543 kb on - strand at 463.562 kb on + strand at 463.641 kb on + strand at 463.641 kb on + strand at 463.642 kb on - strand at 463.642 kb on - strand at 463.642 kb on - strand at 463.642 kb on - strand at 463.683 kb on + strand at 463.684 kb on - strand at 463.684 kb on - strand at 463.704 kb on + strand at 463.704 kb on + strand at 463.705 kb on - strand at 463.705 kb on - strand at 463.747 kb on + strand at 463.747 kb on + strand at 463.748 kb on - strand at 463.750 kb on - strand at 463.750 kb on - strand at 463.933 kb on - strand at 463.933 kb on - strand at 463.933 kb on - strand at 463.952 kb on + strand at 463.969 kb on - strand at 463.986 kb on + strand at 463.993 kb on - strand at 463.993 kb on - strand at 464.015 kb on + strand at 464.016 kb on - strand at 464.020 kb on + strand at 464.021 kb on - strand at 464.021 kb on - strand at 464.034 kb on - strand at 464.034 kb on - strand at 464.034 kb on - strand at 464.034 kb on - strand at 464.034 kb on - strand at 464.034 kb on - strand at 464.061 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 461,598 + -0.8 461,599 - -1.0 461,671 + +0.7 461,672 - +0.6 461,674 - +0.6 461,732 + -2.2 461,732 + -1.8 461,733 - -3.4 461,791 + -3.1 461,792 - -0.6 461,792 - +0.4 461,792 - -0.4 461,814 + -1.8 461,826 + -0.2 461,826 + -0.2 461,827 - +1.8 461,827 - +0.5 461,830 + -1.3 461,831 - -0.4 461,832 + -2.1 461,883 + -0.6 461,884 - +0.6 462,016 + spoIVCA MCAODC_02245 0.32 +0.5 462,016 + spoIVCA MCAODC_02245 0.32 -0.8 462,062 + spoIVCA MCAODC_02245 0.40 +0.5 462,127 + spoIVCA MCAODC_02245 0.51 +1.0 462,212 + spoIVCA MCAODC_02245 0.66 -0.6 462,293 + spoIVCA MCAODC_02245 0.81 +0.2 462,293 + spoIVCA MCAODC_02245 0.81 -0.8 462,294 - spoIVCA MCAODC_02245 0.81 +0.1 462,294 - spoIVCA MCAODC_02245 0.81 -0.7 462,294 - spoIVCA MCAODC_02245 0.81 +0.7 462,397 + -3.6 462,398 - -1.9 462,403 + -0.1 462,403 + +0.6 462,403 + -0.5 462,404 - -0.1 462,404 - +0.7 462,448 + +0.6 462,448 + +0.8 462,449 - -2.9 462,476 + +0.3 462,477 - -0.8 462,542 - -3.5 462,561 + -1.4 462,583 - +0.4 462,602 - +0.7 462,602 - -0.1 462,628 + -1.3 462,629 - +0.2 462,633 - -0.8 462,674 + MCAODC_02250 0.17 -0.6 462,687 + MCAODC_02250 0.19 +0.7 462,694 - MCAODC_02250 0.21 -2.1 462,704 + MCAODC_02250 0.23 +0.6 462,704 + MCAODC_02250 0.23 -2.3 462,704 + MCAODC_02250 0.23 -1.5 462,705 - MCAODC_02250 0.23 +1.4 462,705 - MCAODC_02250 0.23 +0.3 462,705 - MCAODC_02250 0.23 +0.9 462,747 + MCAODC_02250 0.32 +1.1 462,770 + MCAODC_02250 0.37 -1.1 462,780 + MCAODC_02250 0.39 +0.2 462,781 - MCAODC_02250 0.40 +0.2 462,781 - MCAODC_02250 0.40 +0.3 462,782 + MCAODC_02250 0.40 +0.4 462,782 + MCAODC_02250 0.40 -1.5 462,782 + MCAODC_02250 0.40 +0.9 462,782 + MCAODC_02250 0.40 -1.3 462,782 + MCAODC_02250 0.40 -0.8 462,782 + MCAODC_02250 0.40 +1.1 462,782 + MCAODC_02250 0.40 +0.1 462,782 + MCAODC_02250 0.40 -0.0 462,782 + MCAODC_02250 0.40 +0.2 462,782 + MCAODC_02250 0.40 -0.6 462,782 + MCAODC_02250 0.40 -0.1 462,783 - MCAODC_02250 0.40 -0.3 462,783 - MCAODC_02250 0.40 -2.7 462,783 - MCAODC_02250 0.40 +0.0 462,783 - MCAODC_02250 0.40 -0.5 462,783 - MCAODC_02250 0.40 +0.1 462,783 - MCAODC_02250 0.40 +0.6 462,876 + MCAODC_02250 0.60 +1.1 462,877 - MCAODC_02250 0.60 -1.1 462,964 - MCAODC_02250 0.79 +0.1 463,025 + +2.2 463,025 + -0.3 463,025 + -0.3 463,025 + -1.3 463,026 - -1.9 463,026 - -0.8 463,026 - +0.2 463,026 - -0.5 463,026 - +0.7 463,026 - -0.2 463,026 - +0.5 463,026 - -2.5 463,027 + +0.1 463,050 + +0.4 463,062 - +0.9 463,105 - +0.8 463,105 - -0.3 463,106 + -0.3 463,106 + +0.5 463,108 + -0.2 463,156 + +1.3 463,157 - -0.1 463,183 - +1.1 463,234 + +0.7 463,249 + +1.0 463,250 - +0.2 463,296 + +1.5 463,296 + -2.5 463,296 + +0.4 463,296 + +0.8 463,296 + +0.0 463,297 - -1.1 463,297 - +2.7 463,314 + -0.4 463,314 + +0.8 463,314 + +0.3 463,315 - -0.3 463,315 - +0.4 463,315 - +0.6 463,315 - +0.1 463,319 - +0.9 463,319 - +2.4 463,334 + +1.0 463,334 + +0.1 463,334 + -0.5 463,334 + -0.8 463,335 - -0.7 463,335 - -1.4 463,335 - +0.0 463,411 + +0.6 463,412 - -1.9 463,412 - +0.4 463,418 + +0.3 463,418 + +0.5 463,418 + +1.2 463,437 - +1.4 463,437 - +0.1 463,445 + +0.2 463,445 + +0.5 463,445 + -2.0 463,445 + -0.7 463,445 + -0.1 463,446 - -0.7 463,446 - +0.4 463,446 - -1.3 463,446 - +0.1 463,446 - -0.0 463,475 + -0.4 463,475 + -0.0 463,475 + +1.0 463,475 + +1.8 463,476 - +0.1 463,483 - +1.6 463,495 - +0.2 463,518 - -1.2 463,518 - +0.2 463,543 - -0.8 463,562 + -0.3 463,641 + +1.0 463,641 + +0.9 463,642 - +0.6 463,642 - -3.3 463,642 - -1.8 463,642 - +1.5 463,683 + +0.3 463,684 - +1.0 463,684 - +0.4 463,704 + +0.1 463,704 + -0.2 463,705 - +1.1 463,705 - +0.4 463,747 + -1.8 463,747 + -0.0 463,748 - -0.3 463,750 - -0.2 463,750 - -0.2 463,933 - +0.0 463,933 - +0.6 463,933 - -0.1 463,952 + +0.1 463,969 - +0.4 463,986 + -1.5 463,993 - +0.7 463,993 - +1.3 464,015 + -3.4 464,016 - -0.6 464,020 + +1.4 464,021 - +0.3 464,021 - -0.7 464,034 - +1.2 464,034 - +0.0 464,034 - -0.2 464,034 - +0.5 464,034 - -0.3 464,034 - +1.6 464,061 + +1.3
Or see this region's nucleotide sequence