Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt iadA and hypT are separated by 247 nucleotides hypT and iraD overlap by 8 nucleotides iraD and idlP overlap by 4 nucleotides idlP and MCAODC_02060 are separated by 237 nucleotides MCAODC_02060 and yjiC are separated by 253 nucleotides
MCAODC_02040: iadA - beta-aspartyl-peptidase, at 401,269 to 402,441
iadA
MCAODC_02045: hypT - hypochlorite stress DNA-binding transcriptional regulator HypT, at 402,689 to 403,417
hypT
MCAODC_02050: iraD - anti-adapter protein IraD, at 403,410 to 403,802
iraD
MCAODC_02055: idlP - iraD leader peptide, at 403,799 to 403,882
idlP
MCAODC_02060: MCAODC_02060 - hypothetical protein, at 404,120 to 404,221
_02060
MCAODC_02065: yjiC - Uncharacterized protein YjiC, at 404,475 to 405,305
yjiC
Position (kb) 403
404 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 402.440 kb on - strand at 402.460 kb on - strand at 402.497 kb on + strand at 402.504 kb on + strand at 402.504 kb on + strand at 402.505 kb on - strand at 402.532 kb on + strand at 402.760 kb on - strand at 402.760 kb on - strand at 402.760 kb on - strand at 402.808 kb on + strand, within hypT at 402.808 kb on + strand, within hypT at 402.809 kb on - strand, within hypT at 402.886 kb on + strand, within hypT at 402.886 kb on + strand, within hypT at 403.012 kb on - strand, within hypT at 403.012 kb on - strand, within hypT at 403.104 kb on - strand, within hypT at 403.119 kb on - strand, within hypT at 403.136 kb on - strand, within hypT at 403.136 kb on - strand, within hypT at 403.207 kb on - strand, within hypT at 403.253 kb on + strand, within hypT at 403.253 kb on + strand, within hypT at 403.254 kb on - strand, within hypT at 403.412 kb on - strand at 403.500 kb on + strand, within iraD at 403.500 kb on + strand, within iraD at 403.501 kb on - strand, within iraD at 403.581 kb on + strand, within iraD at 403.581 kb on + strand, within iraD at 403.582 kb on - strand, within iraD at 403.610 kb on - strand, within iraD at 403.674 kb on + strand, within iraD at 403.674 kb on + strand, within iraD at 403.674 kb on + strand, within iraD at 403.674 kb on + strand, within iraD at 403.674 kb on + strand, within iraD at 403.675 kb on - strand, within iraD at 403.684 kb on - strand, within iraD at 403.703 kb on + strand, within iraD at 403.822 kb on + strand, within idlP at 403.823 kb on - strand, within idlP at 403.830 kb on + strand, within idlP at 403.830 kb on + strand, within idlP at 403.831 kb on - strand, within idlP at 403.831 kb on - strand, within idlP at 403.864 kb on - strand, within idlP at 403.864 kb on - strand, within idlP at 403.903 kb on + strand at 403.904 kb on - strand at 403.904 kb on - strand at 403.904 kb on - strand at 403.904 kb on - strand at 404.044 kb on + strand at 404.066 kb on + strand at 404.067 kb on - strand at 404.067 kb on - strand at 404.070 kb on + strand at 404.071 kb on - strand at 404.071 kb on - strand at 404.225 kb on + strand at 404.326 kb on - strand at 404.572 kb on - strand, within yjiC at 404.601 kb on - strand, within yjiC at 404.636 kb on + strand, within yjiC at 404.706 kb on + strand, within yjiC at 404.742 kb on - strand, within yjiC at 404.742 kb on - strand, within yjiC at 404.756 kb on + strand, within yjiC at 404.757 kb on - strand, within yjiC at 404.757 kb on - strand, within yjiC at 404.800 kb on + strand, within yjiC at 404.801 kb on - strand, within yjiC
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 402,440 - +0.6 402,460 - -0.1 402,497 + +0.2 402,504 + +0.9 402,504 + +0.8 402,505 - +0.3 402,532 + +1.3 402,760 - +1.0 402,760 - +0.1 402,760 - +1.5 402,808 + hypT MCAODC_02045 0.16 -3.6 402,808 + hypT MCAODC_02045 0.16 -2.4 402,809 - hypT MCAODC_02045 0.16 -0.1 402,886 + hypT MCAODC_02045 0.27 +0.1 402,886 + hypT MCAODC_02045 0.27 -0.3 403,012 - hypT MCAODC_02045 0.44 -0.4 403,012 - hypT MCAODC_02045 0.44 -0.0 403,104 - hypT MCAODC_02045 0.57 +1.4 403,119 - hypT MCAODC_02045 0.59 -0.7 403,136 - hypT MCAODC_02045 0.61 -1.2 403,136 - hypT MCAODC_02045 0.61 +1.4 403,207 - hypT MCAODC_02045 0.71 -2.8 403,253 + hypT MCAODC_02045 0.77 +0.4 403,253 + hypT MCAODC_02045 0.77 -1.1 403,254 - hypT MCAODC_02045 0.78 -0.7 403,412 - -2.9 403,500 + iraD MCAODC_02050 0.23 -0.4 403,500 + iraD MCAODC_02050 0.23 -0.3 403,501 - iraD MCAODC_02050 0.23 +0.6 403,581 + iraD MCAODC_02050 0.44 -1.1 403,581 + iraD MCAODC_02050 0.44 +0.0 403,582 - iraD MCAODC_02050 0.44 -1.1 403,610 - iraD MCAODC_02050 0.51 +0.4 403,674 + iraD MCAODC_02050 0.67 +0.8 403,674 + iraD MCAODC_02050 0.67 +0.2 403,674 + iraD MCAODC_02050 0.67 +2.0 403,674 + iraD MCAODC_02050 0.67 -0.0 403,674 + iraD MCAODC_02050 0.67 -0.2 403,675 - iraD MCAODC_02050 0.67 +0.8 403,684 - iraD MCAODC_02050 0.70 +0.3 403,703 + iraD MCAODC_02050 0.75 +0.5 403,822 + idlP MCAODC_02055 0.27 +0.5 403,823 - idlP MCAODC_02055 0.29 -0.6 403,830 + idlP MCAODC_02055 0.37 -0.5 403,830 + idlP MCAODC_02055 0.37 -0.0 403,831 - idlP MCAODC_02055 0.38 +0.6 403,831 - idlP MCAODC_02055 0.38 -2.5 403,864 - idlP MCAODC_02055 0.77 -0.6 403,864 - idlP MCAODC_02055 0.77 +0.2 403,903 + +0.7 403,904 - -1.2 403,904 - +0.3 403,904 - +0.2 403,904 - -0.3 404,044 + +1.1 404,066 + +1.4 404,067 - +1.9 404,067 - -0.4 404,070 + +0.2 404,071 - +0.5 404,071 - -1.5 404,225 + +0.2 404,326 - -1.5 404,572 - yjiC MCAODC_02065 0.12 +0.1 404,601 - yjiC MCAODC_02065 0.15 -2.7 404,636 + yjiC MCAODC_02065 0.19 -0.8 404,706 + yjiC MCAODC_02065 0.28 +2.0 404,742 - yjiC MCAODC_02065 0.32 +1.0 404,742 - yjiC MCAODC_02065 0.32 +0.9 404,756 + yjiC MCAODC_02065 0.34 +0.6 404,757 - yjiC MCAODC_02065 0.34 +0.7 404,757 - yjiC MCAODC_02065 0.34 +2.5 404,800 + yjiC MCAODC_02065 0.39 +0.1 404,801 - yjiC MCAODC_02065 0.39 -0.5
Or see this region's nucleotide sequence