Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt msyB and satP are separated by 148 nucleotides satP and mog are separated by 34 nucleotides mog and MCAODC_01595 are separated by 114 nucleotides
MCAODC_01580: msyB - acidic protein MsyB, at 305,817 to 306,530
msyB
MCAODC_01585: satP - acetate uptake transporter, at 306,679 to 307,245
satP
MCAODC_01590: mog - molybdopterin adenylyltransferase, at 307,280 to 307,867
mog
MCAODC_01595: MCAODC_01595 - transaldolase B, at 307,982 to 308,935
_01595
Position (kb) 307
308 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 306.346 kb on + strand, within msyB at 306.346 kb on + strand, within msyB at 306.347 kb on - strand, within msyB at 306.347 kb on - strand, within msyB at 306.370 kb on + strand, within msyB at 306.370 kb on + strand, within msyB at 306.415 kb on + strand, within msyB at 306.459 kb on + strand at 306.576 kb on - strand at 306.576 kb on - strand at 306.598 kb on + strand at 306.598 kb on + strand at 306.599 kb on - strand at 306.601 kb on + strand at 306.601 kb on + strand at 306.601 kb on + strand at 306.623 kb on - strand at 306.678 kb on + strand at 306.678 kb on + strand at 306.679 kb on - strand at 306.690 kb on + strand at 306.690 kb on + strand at 306.690 kb on + strand at 306.691 kb on - strand at 306.691 kb on - strand at 306.691 kb on - strand at 306.691 kb on - strand at 306.764 kb on + strand, within satP at 306.764 kb on + strand, within satP at 306.764 kb on + strand, within satP at 306.764 kb on + strand, within satP at 306.764 kb on + strand, within satP at 306.764 kb on + strand, within satP at 306.765 kb on - strand, within satP at 306.770 kb on - strand, within satP at 306.770 kb on - strand, within satP at 306.770 kb on - strand, within satP at 306.787 kb on - strand, within satP at 306.787 kb on - strand, within satP at 306.789 kb on + strand, within satP at 306.789 kb on + strand, within satP at 306.790 kb on - strand, within satP at 306.790 kb on - strand, within satP at 306.892 kb on + strand, within satP at 306.892 kb on + strand, within satP at 306.982 kb on + strand, within satP at 306.982 kb on + strand, within satP at 306.983 kb on - strand, within satP at 306.983 kb on - strand, within satP at 307.001 kb on + strand, within satP at 307.005 kb on + strand, within satP at 307.014 kb on + strand, within satP at 307.014 kb on + strand, within satP at 307.014 kb on + strand, within satP at 307.014 kb on + strand, within satP at 307.014 kb on + strand, within satP at 307.015 kb on - strand, within satP at 307.015 kb on - strand, within satP at 307.015 kb on - strand, within satP at 307.015 kb on - strand, within satP at 307.175 kb on - strand, within satP at 307.282 kb on - strand at 307.350 kb on + strand, within mog at 307.351 kb on - strand, within mog at 307.378 kb on - strand, within mog at 307.403 kb on + strand, within mog at 307.404 kb on - strand, within mog at 307.451 kb on - strand, within mog at 307.454 kb on - strand, within mog at 307.473 kb on - strand, within mog at 307.619 kb on + strand, within mog at 307.620 kb on - strand, within mog at 307.730 kb on + strand, within mog at 307.731 kb on - strand, within mog at 307.853 kb on - strand at 307.853 kb on - strand at 307.853 kb on - strand at 307.856 kb on + strand at 307.857 kb on - strand at 307.862 kb on - strand at 307.862 kb on - strand at 307.908 kb on + strand at 307.908 kb on + strand at 307.909 kb on - strand at 307.947 kb on + strand at 307.948 kb on - strand at 307.983 kb on + strand at 307.983 kb on + strand at 307.984 kb on - strand at 308.042 kb on - strand at 308.042 kb on - strand at 308.056 kb on + strand at 308.061 kb on - strand at 308.061 kb on - strand at 308.143 kb on - strand, within MCAODC_01595 at 308.152 kb on + strand, within MCAODC_01595 at 308.152 kb on + strand, within MCAODC_01595 at 308.152 kb on + strand, within MCAODC_01595 at 308.152 kb on + strand, within MCAODC_01595 at 308.153 kb on - strand, within MCAODC_01595 at 308.153 kb on - strand, within MCAODC_01595 at 308.298 kb on + strand, within MCAODC_01595 at 308.298 kb on + strand, within MCAODC_01595 at 308.298 kb on + strand, within MCAODC_01595 at 308.299 kb on - strand, within MCAODC_01595 at 308.299 kb on - strand, within MCAODC_01595 at 308.299 kb on - strand, within MCAODC_01595 at 308.302 kb on - strand, within MCAODC_01595 at 308.379 kb on + strand, within MCAODC_01595 at 308.379 kb on + strand, within MCAODC_01595 at 308.379 kb on + strand, within MCAODC_01595 at 308.380 kb on - strand, within MCAODC_01595 at 308.380 kb on - strand, within MCAODC_01595 at 308.476 kb on + strand, within MCAODC_01595 at 308.476 kb on + strand, within MCAODC_01595 at 308.477 kb on - strand, within MCAODC_01595 at 308.485 kb on + strand, within MCAODC_01595 at 308.485 kb on + strand, within MCAODC_01595 at 308.486 kb on - strand, within MCAODC_01595 at 308.486 kb on - strand, within MCAODC_01595 at 308.531 kb on - strand, within MCAODC_01595 at 308.552 kb on - strand, within MCAODC_01595 at 308.552 kb on - strand, within MCAODC_01595 at 308.566 kb on + strand, within MCAODC_01595 at 308.566 kb on + strand, within MCAODC_01595 at 308.566 kb on + strand, within MCAODC_01595 at 308.566 kb on + strand, within MCAODC_01595 at 308.567 kb on - strand, within MCAODC_01595 at 308.581 kb on - strand, within MCAODC_01595 at 308.581 kb on - strand, within MCAODC_01595 at 308.659 kb on + strand, within MCAODC_01595 at 308.696 kb on - strand, within MCAODC_01595 at 308.696 kb on - strand, within MCAODC_01595 at 308.699 kb on + strand, within MCAODC_01595 at 308.699 kb on + strand, within MCAODC_01595 at 308.700 kb on - strand, within MCAODC_01595 at 308.700 kb on - strand, within MCAODC_01595 at 308.700 kb on - strand, within MCAODC_01595 at 308.788 kb on + strand, within MCAODC_01595 at 308.788 kb on + strand, within MCAODC_01595 at 308.789 kb on - strand, within MCAODC_01595 at 308.857 kb on - strand at 308.857 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 306,346 + msyB MCAODC_01580 0.74 +0.4 306,346 + msyB MCAODC_01580 0.74 -0.2 306,347 - msyB MCAODC_01580 0.74 -0.0 306,347 - msyB MCAODC_01580 0.74 -0.6 306,370 + msyB MCAODC_01580 0.77 -0.3 306,370 + msyB MCAODC_01580 0.77 +0.4 306,415 + msyB MCAODC_01580 0.84 -2.3 306,459 + -2.5 306,576 - +0.1 306,576 - +0.2 306,598 + -1.9 306,598 + +0.0 306,599 - -0.2 306,601 + -2.4 306,601 + -0.0 306,601 + -0.3 306,623 - -0.7 306,678 + +1.3 306,678 + +0.6 306,679 - -0.3 306,690 + -0.7 306,690 + -1.1 306,690 + +0.0 306,691 - +0.6 306,691 - -1.3 306,691 - -0.1 306,691 - -0.2 306,764 + satP MCAODC_01585 0.15 -2.0 306,764 + satP MCAODC_01585 0.15 -0.3 306,764 + satP MCAODC_01585 0.15 +1.0 306,764 + satP MCAODC_01585 0.15 -0.2 306,764 + satP MCAODC_01585 0.15 -3.3 306,764 + satP MCAODC_01585 0.15 -0.4 306,765 - satP MCAODC_01585 0.15 +1.3 306,770 - satP MCAODC_01585 0.16 -0.2 306,770 - satP MCAODC_01585 0.16 +0.0 306,770 - satP MCAODC_01585 0.16 +0.2 306,787 - satP MCAODC_01585 0.19 -0.1 306,787 - satP MCAODC_01585 0.19 -0.0 306,789 + satP MCAODC_01585 0.19 +0.6 306,789 + satP MCAODC_01585 0.19 -0.2 306,790 - satP MCAODC_01585 0.20 +2.3 306,790 - satP MCAODC_01585 0.20 +2.0 306,892 + satP MCAODC_01585 0.38 +0.3 306,892 + satP MCAODC_01585 0.38 -0.0 306,982 + satP MCAODC_01585 0.53 +1.8 306,982 + satP MCAODC_01585 0.53 -0.5 306,983 - satP MCAODC_01585 0.54 +0.8 306,983 - satP MCAODC_01585 0.54 +0.2 307,001 + satP MCAODC_01585 0.57 +0.7 307,005 + satP MCAODC_01585 0.57 +1.5 307,014 + satP MCAODC_01585 0.59 -1.1 307,014 + satP MCAODC_01585 0.59 +3.3 307,014 + satP MCAODC_01585 0.59 +0.5 307,014 + satP MCAODC_01585 0.59 +0.6 307,014 + satP MCAODC_01585 0.59 +0.4 307,015 - satP MCAODC_01585 0.59 +2.5 307,015 - satP MCAODC_01585 0.59 +0.2 307,015 - satP MCAODC_01585 0.59 +0.1 307,015 - satP MCAODC_01585 0.59 +0.8 307,175 - satP MCAODC_01585 0.87 +0.1 307,282 - -2.1 307,350 + mog MCAODC_01590 0.12 -0.1 307,351 - mog MCAODC_01590 0.12 +0.1 307,378 - mog MCAODC_01590 0.17 +0.3 307,403 + mog MCAODC_01590 0.21 +0.7 307,404 - mog MCAODC_01590 0.21 +0.5 307,451 - mog MCAODC_01590 0.29 +0.3 307,454 - mog MCAODC_01590 0.30 +1.0 307,473 - mog MCAODC_01590 0.33 -0.6 307,619 + mog MCAODC_01590 0.58 +0.8 307,620 - mog MCAODC_01590 0.58 -0.1 307,730 + mog MCAODC_01590 0.77 +0.3 307,731 - mog MCAODC_01590 0.77 +0.4 307,853 - -0.2 307,853 - -0.3 307,853 - -0.5 307,856 + +0.5 307,857 - -0.6 307,862 - +0.0 307,862 - +1.6 307,908 + +1.5 307,908 + -0.1 307,909 - +0.8 307,947 + +0.7 307,948 - -0.2 307,983 + -0.5 307,983 + -1.0 307,984 - -2.7 308,042 - -1.1 308,042 - -0.6 308,056 + -1.0 308,061 - +0.6 308,061 - +0.0 308,143 - MCAODC_01595 0.17 +0.4 308,152 + MCAODC_01595 0.18 -0.8 308,152 + MCAODC_01595 0.18 -3.1 308,152 + MCAODC_01595 0.18 +0.8 308,152 + MCAODC_01595 0.18 -0.4 308,153 - MCAODC_01595 0.18 +1.6 308,153 - MCAODC_01595 0.18 -0.5 308,298 + MCAODC_01595 0.33 +0.5 308,298 + MCAODC_01595 0.33 -4.3 308,298 + MCAODC_01595 0.33 +0.9 308,299 - MCAODC_01595 0.33 +1.0 308,299 - MCAODC_01595 0.33 +0.4 308,299 - MCAODC_01595 0.33 +2.0 308,302 - MCAODC_01595 0.34 -0.4 308,379 + MCAODC_01595 0.42 +1.0 308,379 + MCAODC_01595 0.42 +0.6 308,379 + MCAODC_01595 0.42 -1.4 308,380 - MCAODC_01595 0.42 +0.1 308,380 - MCAODC_01595 0.42 +0.3 308,476 + MCAODC_01595 0.52 -2.5 308,476 + MCAODC_01595 0.52 -0.3 308,477 - MCAODC_01595 0.52 +1.4 308,485 + MCAODC_01595 0.53 +0.4 308,485 + MCAODC_01595 0.53 -0.1 308,486 - MCAODC_01595 0.53 -0.3 308,486 - MCAODC_01595 0.53 +0.8 308,531 - MCAODC_01595 0.58 -0.2 308,552 - MCAODC_01595 0.60 +0.1 308,552 - MCAODC_01595 0.60 +0.4 308,566 + MCAODC_01595 0.61 +0.2 308,566 + MCAODC_01595 0.61 +0.8 308,566 + MCAODC_01595 0.61 -0.2 308,566 + MCAODC_01595 0.61 -0.3 308,567 - MCAODC_01595 0.61 +0.1 308,581 - MCAODC_01595 0.63 +1.4 308,581 - MCAODC_01595 0.63 -0.9 308,659 + MCAODC_01595 0.71 -0.0 308,696 - MCAODC_01595 0.75 +0.5 308,696 - MCAODC_01595 0.75 -0.8 308,699 + MCAODC_01595 0.75 +1.0 308,699 + MCAODC_01595 0.75 +2.5 308,700 - MCAODC_01595 0.75 -1.0 308,700 - MCAODC_01595 0.75 +0.0 308,700 - MCAODC_01595 0.75 +0.8 308,788 + MCAODC_01595 0.84 -1.0 308,788 + MCAODC_01595 0.84 -1.1 308,789 - MCAODC_01595 0.85 +0.4 308,857 - +1.4 308,857 - +1.3
Or see this region's nucleotide sequence