Strain Fitness in Escherichia coli ECRC101 around MCAODC_00400

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
58,395	+				-2.8
58,462	+	tssG	MCAODC_00395	0.16	-1.4
58,630	-	tssG	MCAODC_00395	0.32	-0.0
58,632	+	tssG	MCAODC_00395	0.32	-1.3
58,632	+	tssG	MCAODC_00395	0.32	-2.0
58,632	+	tssG	MCAODC_00395	0.32	+0.3
58,633	-	tssG	MCAODC_00395	0.32	+0.7
58,633	-	tssG	MCAODC_00395	0.32	+1.6
58,633	-	tssG	MCAODC_00395	0.32	+0.0
58,739	+	tssG	MCAODC_00395	0.42	+0.6
58,740	-	tssG	MCAODC_00395	0.42	-0.6
58,743	+	tssG	MCAODC_00395	0.42	+0.7
58,749	+	tssG	MCAODC_00395	0.43	+1.1
58,800	+	tssG	MCAODC_00395	0.47	+0.3
58,801	-	tssG	MCAODC_00395	0.47	-0.3
58,850	+	tssG	MCAODC_00395	0.52	+0.1
58,872	+	tssG	MCAODC_00395	0.54	-0.7
59,022	+	tssG	MCAODC_00395	0.68	+0.9
59,022	+	tssG	MCAODC_00395	0.68	-0.6
59,022	+	tssG	MCAODC_00395	0.68	+0.9
59,023	-	tssG	MCAODC_00395	0.68	+1.1
59,023	-	tssG	MCAODC_00395	0.68	+1.0
59,123	+	tssG	MCAODC_00395	0.77	-0.6
59,124	-	tssG	MCAODC_00395	0.77	-0.0
59,236	+	tssG	MCAODC_00395	0.88	-1.3
59,236	+	tssG	MCAODC_00395	0.88	+1.1
59,237	-	tssG	MCAODC_00395	0.88	+0.9
59,237	-	tssG	MCAODC_00395	0.88	+0.4
59,237	-	tssG	MCAODC_00395	0.88	+1.1
59,237	-	tssG	MCAODC_00395	0.88	-0.9
59,360	-				-0.1
59,360	-				-0.8
59,368	-				+0.0
59,368	-				+1.0
59,394	-				+0.4
59,410	+				+0.1
59,528	-	fha	MCAODC_00400	0.10	-0.7
59,659	+	fha	MCAODC_00400	0.21	+0.1
59,659	+	fha	MCAODC_00400	0.21	+0.3
59,659	+	fha	MCAODC_00400	0.21	+2.0
59,659	+	fha	MCAODC_00400	0.21	+0.0
59,660	-	fha	MCAODC_00400	0.21	-1.5
59,730	-	fha	MCAODC_00400	0.26	-0.5
59,740	-	fha	MCAODC_00400	0.27	+1.1
59,787	-	fha	MCAODC_00400	0.31	-0.1
59,806	+	fha	MCAODC_00400	0.32	+0.2
59,807	-	fha	MCAODC_00400	0.32	-1.7
59,925	-	fha	MCAODC_00400	0.41	+0.8
59,925	-	fha	MCAODC_00400	0.41	+0.1
59,993	+	fha	MCAODC_00400	0.47	+1.0
59,994	-	fha	MCAODC_00400	0.47	-0.8
59,994	-	fha	MCAODC_00400	0.47	+1.2
59,994	-	fha	MCAODC_00400	0.47	+0.3
60,036	+	fha	MCAODC_00400	0.50	+0.3
60,036	+	fha	MCAODC_00400	0.50	-0.4
60,056	+	fha	MCAODC_00400	0.52	-1.6
60,056	+	fha	MCAODC_00400	0.52	+0.8
60,056	+	fha	MCAODC_00400	0.52	-1.2
60,056	+	fha	MCAODC_00400	0.52	-0.6
60,057	-	fha	MCAODC_00400	0.52	+1.0
60,057	-	fha	MCAODC_00400	0.52	-2.4
60,206	-	fha	MCAODC_00400	0.63	-0.9
60,301	-	fha	MCAODC_00400	0.71	+1.1
60,336	-	fha	MCAODC_00400	0.74	+0.4
60,347	-	fha	MCAODC_00400	0.74	+0.2
60,550	-				+0.6
60,558	+				-2.1
60,558	+				-0.1
60,559	-				-0.1
60,619	-				+0.7
60,619	-				+1.1
60,619	-				+0.2
60,619	-				-0.7
60,630	+				+0.7
60,630	+				+0.4
60,630	+				+0.5
60,714	+				+0.2
60,714	+				-0.9
60,715	-				+0.0
60,715	-				+0.3
60,887	+	tssJ	MCAODC_00405	0.41	+1.3
60,923	+	tssJ	MCAODC_00405	0.48	-1.5
60,924	-	tssJ	MCAODC_00405	0.48	-0.9
60,924	-	tssJ	MCAODC_00405	0.48	-2.0
60,934	-	tssJ	MCAODC_00405	0.50	-0.8
60,964	+	tssJ	MCAODC_00405	0.56	+0.2
60,972	-	tssJ	MCAODC_00405	0.57	+0.6
61,055	-	tssJ	MCAODC_00405	0.73	-1.8
61,070	+	tssJ	MCAODC_00405	0.76	-0.1
61,155	+				+0.6
61,155	+				-0.8
61,156	-				-2.0
61,156	-				+1.3
61,193	+				-0.7
61,193	+				-0.1
61,193	+				-0.4
61,194	-				-0.0
61,194	-				+0.5
61,194	-				+1.6
61,194	-				-0.1
61,194	-				-0.0
61,194	-				-0.5
61,197	+				+0.3
61,277	-				+0.5
61,285	+				+0.2
61,285	+				-0.0
61,294	-				-1.6
61,322	+				-0.4
61,322	+				+0.3
61,322	+				+0.3
61,375	-	tssK	MCAODC_00410	0.13	+1.8
61,375	-	tssK	MCAODC_00410	0.13	-0.6
61,497	+	tssK	MCAODC_00410	0.22	-0.7
61,568	-	tssK	MCAODC_00410	0.28	-0.9
61,580	-	tssK	MCAODC_00410	0.29	-0.8
61,657	-	tssK	MCAODC_00410	0.34	-0.1
61,674	+	tssK	MCAODC_00410	0.36	-0.4