Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_00350 and rhsA are separated by 139 nucleotides rhsA and vgrG,tssI are separated by 75 nucleotides
MCAODC_00350: MCAODC_00350 - Ankyrin repeat containing virulence factor, at 45,034 to 45,750
_00350
MCAODC_00355: rhsA - type IV secretion protein Rhs, at 45,890 to 50,122
rhsA
MCAODC_00360: vgrG,tssI - type VI secretion system effector VgrG, at 50,198 to 52,339
vgrG,tssI
Position (kb) 45
46
47
48
49
50
51 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 44.892 kb on + strand at 44.893 kb on - strand at 44.893 kb on - strand at 44.908 kb on - strand at 44.910 kb on + strand at 44.910 kb on + strand at 44.910 kb on + strand at 44.910 kb on + strand at 44.915 kb on - strand at 44.967 kb on - strand at 45.348 kb on + strand, within MCAODC_00350 at 45.646 kb on + strand, within MCAODC_00350 at 45.757 kb on - strand at 45.821 kb on - strand at 45.922 kb on + strand at 46.064 kb on + strand at 46.099 kb on + strand at 46.100 kb on - strand at 46.168 kb on + strand at 46.221 kb on - strand at 46.230 kb on + strand at 46.293 kb on - strand at 46.325 kb on + strand, within rhsA at 46.404 kb on + strand, within rhsA at 46.431 kb on - strand, within rhsA at 46.432 kb on + strand, within rhsA at 46.454 kb on - strand, within rhsA at 46.454 kb on - strand, within rhsA at 46.455 kb on + strand, within rhsA at 46.455 kb on + strand, within rhsA at 46.455 kb on + strand, within rhsA at 46.455 kb on + strand, within rhsA at 46.456 kb on - strand, within rhsA at 46.476 kb on + strand, within rhsA at 46.476 kb on + strand, within rhsA at 46.476 kb on + strand, within rhsA at 46.494 kb on + strand, within rhsA at 46.494 kb on + strand, within rhsA at 46.495 kb on - strand, within rhsA at 46.495 kb on - strand, within rhsA at 46.495 kb on - strand, within rhsA at 46.498 kb on - strand, within rhsA at 46.518 kb on + strand, within rhsA at 46.518 kb on + strand, within rhsA at 46.519 kb on - strand, within rhsA at 46.519 kb on - strand, within rhsA at 46.696 kb on - strand, within rhsA at 47.285 kb on - strand, within rhsA at 47.285 kb on - strand, within rhsA at 47.285 kb on - strand, within rhsA at 47.285 kb on - strand, within rhsA at 47.287 kb on - strand, within rhsA at 47.287 kb on - strand, within rhsA at 47.287 kb on - strand, within rhsA at 47.287 kb on - strand, within rhsA at 47.287 kb on - strand, within rhsA at 47.287 kb on - strand, within rhsA at 47.598 kb on + strand, within rhsA at 47.598 kb on + strand, within rhsA at 47.598 kb on + strand, within rhsA at 47.652 kb on + strand, within rhsA at 47.706 kb on + strand, within rhsA at 47.706 kb on + strand, within rhsA at 47.706 kb on + strand, within rhsA at 47.866 kb on - strand, within rhsA at 47.866 kb on - strand, within rhsA at 47.902 kb on + strand, within rhsA at 47.937 kb on + strand, within rhsA at 47.937 kb on + strand, within rhsA at 47.938 kb on - strand, within rhsA at 48.001 kb on - strand, within rhsA at 48.001 kb on - strand, within rhsA at 48.066 kb on + strand, within rhsA at 48.186 kb on + strand, within rhsA at 48.246 kb on + strand, within rhsA at 48.246 kb on + strand, within rhsA at 48.246 kb on + strand, within rhsA at 48.246 kb on + strand, within rhsA at 48.247 kb on - strand, within rhsA at 48.247 kb on - strand, within rhsA at 48.247 kb on - strand, within rhsA at 48.252 kb on - strand, within rhsA at 48.252 kb on - strand, within rhsA at 48.309 kb on + strand, within rhsA at 48.372 kb on + strand, within rhsA at 48.372 kb on + strand, within rhsA at 48.373 kb on - strand, within rhsA at 48.373 kb on - strand, within rhsA at 48.373 kb on - strand, within rhsA at 48.373 kb on - strand, within rhsA at 48.381 kb on + strand, within rhsA at 48.381 kb on + strand, within rhsA at 48.382 kb on - strand, within rhsA at 48.382 kb on - strand, within rhsA at 48.435 kb on + strand, within rhsA at 48.435 kb on + strand, within rhsA at 48.435 kb on + strand, within rhsA at 48.436 kb on - strand, within rhsA at 48.436 kb on - strand, within rhsA at 48.436 kb on - strand, within rhsA at 48.442 kb on - strand, within rhsA at 48.534 kb on - strand, within rhsA at 48.567 kb on + strand, within rhsA at 48.567 kb on + strand, within rhsA at 48.567 kb on + strand, within rhsA at 48.567 kb on + strand, within rhsA at 48.567 kb on + strand, within rhsA at 48.567 kb on + strand, within rhsA at 48.567 kb on + strand, within rhsA at 48.568 kb on - strand, within rhsA at 48.568 kb on - strand, within rhsA at 48.568 kb on - strand, within rhsA at 48.568 kb on - strand, within rhsA at 48.568 kb on - strand, within rhsA at 48.630 kb on + strand, within rhsA at 48.661 kb on - strand, within rhsA at 48.693 kb on + strand, within rhsA at 48.694 kb on - strand, within rhsA at 48.754 kb on + strand, within rhsA at 48.754 kb on + strand, within rhsA at 48.766 kb on - strand, within rhsA at 48.766 kb on - strand, within rhsA at 48.897 kb on + strand, within rhsA at 49.084 kb on - strand, within rhsA at 49.120 kb on - strand, within rhsA at 49.120 kb on - strand, within rhsA at 49.149 kb on + strand, within rhsA at 49.149 kb on + strand, within rhsA at 49.156 kb on - strand, within rhsA at 49.323 kb on - strand, within rhsA at 49.343 kb on - strand, within rhsA at 49.349 kb on + strand, within rhsA at 49.349 kb on + strand, within rhsA at 49.349 kb on + strand, within rhsA at 49.350 kb on - strand, within rhsA at 49.605 kb on + strand, within rhsA at 49.605 kb on + strand, within rhsA at 49.605 kb on + strand, within rhsA at 49.605 kb on + strand, within rhsA at 49.605 kb on + strand, within rhsA at 49.605 kb on + strand, within rhsA at 49.606 kb on - strand, within rhsA at 49.606 kb on - strand, within rhsA at 49.606 kb on - strand, within rhsA at 49.606 kb on - strand, within rhsA at 49.606 kb on - strand, within rhsA at 49.606 kb on - strand, within rhsA at 49.606 kb on - strand, within rhsA at 49.609 kb on + strand, within rhsA at 49.609 kb on + strand, within rhsA at 49.609 kb on + strand, within rhsA at 49.609 kb on + strand, within rhsA at 49.609 kb on + strand, within rhsA at 49.609 kb on + strand, within rhsA at 49.609 kb on + strand, within rhsA at 49.610 kb on - strand, within rhsA at 49.610 kb on - strand, within rhsA at 49.610 kb on - strand, within rhsA at 49.610 kb on - strand, within rhsA at 49.725 kb on + strand at 49.726 kb on - strand at 49.726 kb on - strand at 49.731 kb on - strand at 49.731 kb on - strand at 49.731 kb on - strand at 49.788 kb on - strand at 49.805 kb on + strand at 49.891 kb on - strand at 49.989 kb on + strand at 49.989 kb on + strand at 49.990 kb on - strand at 49.990 kb on - strand at 49.990 kb on - strand at 49.990 kb on - strand at 49.990 kb on - strand at 49.990 kb on - strand at 49.993 kb on + strand at 49.993 kb on + strand at 49.994 kb on - strand at 49.994 kb on - strand at 50.039 kb on + strand at 50.039 kb on + strand at 50.040 kb on - strand at 50.040 kb on - strand at 50.143 kb on + strand at 50.143 kb on + strand at 50.143 kb on + strand at 50.143 kb on + strand at 50.144 kb on - strand at 50.144 kb on - strand at 50.144 kb on - strand at 50.146 kb on + strand at 50.147 kb on - strand at 50.147 kb on - strand at 50.231 kb on + strand at 50.287 kb on + strand at 50.288 kb on - strand at 50.288 kb on - strand at 50.347 kb on + strand at 50.348 kb on - strand at 50.355 kb on - strand at 50.355 kb on - strand at 50.389 kb on + strand at 50.503 kb on - strand, within vgrG,tssI at 50.527 kb on + strand, within vgrG,tssI at 50.527 kb on + strand, within vgrG,tssI at 50.528 kb on - strand, within vgrG,tssI at 50.528 kb on - strand, within vgrG,tssI at 50.537 kb on + strand, within vgrG,tssI at 50.538 kb on - strand, within vgrG,tssI at 50.538 kb on - strand, within vgrG,tssI at 50.569 kb on + strand, within vgrG,tssI at 50.569 kb on + strand, within vgrG,tssI at 50.575 kb on + strand, within vgrG,tssI at 50.576 kb on - strand, within vgrG,tssI at 50.599 kb on - strand, within vgrG,tssI at 50.714 kb on + strand, within vgrG,tssI at 50.715 kb on - strand, within vgrG,tssI at 50.715 kb on - strand, within vgrG,tssI at 50.715 kb on - strand, within vgrG,tssI at 50.773 kb on + strand, within vgrG,tssI at 50.773 kb on + strand, within vgrG,tssI at 50.773 kb on + strand, within vgrG,tssI at 50.777 kb on + strand, within vgrG,tssI at 50.902 kb on + strand, within vgrG,tssI at 50.902 kb on + strand, within vgrG,tssI at 50.992 kb on - strand, within vgrG,tssI
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 44,892 + +0.7 44,893 - +0.4 44,893 - -0.2 44,908 - -0.0 44,910 + -4.9 44,910 + -0.2 44,910 + +1.7 44,910 + +1.7 44,915 - -0.4 44,967 - -0.9 45,348 + MCAODC_00350 0.44 -1.6 45,646 + MCAODC_00350 0.85 -0.2 45,757 - +0.8 45,821 - +0.8 45,922 + -2.7 46,064 + +0.4 46,099 + +0.2 46,100 - -1.3 46,168 + +0.6 46,221 - +0.3 46,230 + +2.0 46,293 - +0.6 46,325 + rhsA MCAODC_00355 0.10 +0.1 46,404 + rhsA MCAODC_00355 0.12 +1.2 46,431 - rhsA MCAODC_00355 0.13 +0.7 46,432 + rhsA MCAODC_00355 0.13 -0.4 46,454 - rhsA MCAODC_00355 0.13 +0.5 46,454 - rhsA MCAODC_00355 0.13 +0.0 46,455 + rhsA MCAODC_00355 0.13 +0.6 46,455 + rhsA MCAODC_00355 0.13 +0.2 46,455 + rhsA MCAODC_00355 0.13 -0.6 46,455 + rhsA MCAODC_00355 0.13 +1.3 46,456 - rhsA MCAODC_00355 0.13 -0.2 46,476 + rhsA MCAODC_00355 0.14 -1.4 46,476 + rhsA MCAODC_00355 0.14 -0.6 46,476 + rhsA MCAODC_00355 0.14 -0.1 46,494 + rhsA MCAODC_00355 0.14 +0.7 46,494 + rhsA MCAODC_00355 0.14 +0.6 46,495 - rhsA MCAODC_00355 0.14 +2.2 46,495 - rhsA MCAODC_00355 0.14 -2.2 46,495 - rhsA MCAODC_00355 0.14 +0.5 46,498 - rhsA MCAODC_00355 0.14 -0.1 46,518 + rhsA MCAODC_00355 0.15 -0.1 46,518 + rhsA MCAODC_00355 0.15 +1.6 46,519 - rhsA MCAODC_00355 0.15 +0.5 46,519 - rhsA MCAODC_00355 0.15 -0.1 46,696 - rhsA MCAODC_00355 0.19 +0.0 47,285 - rhsA MCAODC_00355 0.33 +0.3 47,285 - rhsA MCAODC_00355 0.33 -0.7 47,285 - rhsA MCAODC_00355 0.33 -0.0 47,285 - rhsA MCAODC_00355 0.33 -0.0 47,287 - rhsA MCAODC_00355 0.33 +3.2 47,287 - rhsA MCAODC_00355 0.33 -1.4 47,287 - rhsA MCAODC_00355 0.33 +0.9 47,287 - rhsA MCAODC_00355 0.33 +0.5 47,287 - rhsA MCAODC_00355 0.33 -0.5 47,287 - rhsA MCAODC_00355 0.33 -0.6 47,598 + rhsA MCAODC_00355 0.40 +0.5 47,598 + rhsA MCAODC_00355 0.40 +1.2 47,598 + rhsA MCAODC_00355 0.40 -1.2 47,652 + rhsA MCAODC_00355 0.42 +2.0 47,706 + rhsA MCAODC_00355 0.43 -2.0 47,706 + rhsA MCAODC_00355 0.43 +0.2 47,706 + rhsA MCAODC_00355 0.43 +0.4 47,866 - rhsA MCAODC_00355 0.47 +0.4 47,866 - rhsA MCAODC_00355 0.47 -1.3 47,902 + rhsA MCAODC_00355 0.48 +0.3 47,937 + rhsA MCAODC_00355 0.48 -0.2 47,937 + rhsA MCAODC_00355 0.48 -0.2 47,938 - rhsA MCAODC_00355 0.48 -0.1 48,001 - rhsA MCAODC_00355 0.50 +0.7 48,001 - rhsA MCAODC_00355 0.50 +0.4 48,066 + rhsA MCAODC_00355 0.51 -1.2 48,186 + rhsA MCAODC_00355 0.54 -2.7 48,246 + rhsA MCAODC_00355 0.56 +0.5 48,246 + rhsA MCAODC_00355 0.56 -2.2 48,246 + rhsA MCAODC_00355 0.56 -0.0 48,246 + rhsA MCAODC_00355 0.56 +0.5 48,247 - rhsA MCAODC_00355 0.56 -1.4 48,247 - rhsA MCAODC_00355 0.56 +0.6 48,247 - rhsA MCAODC_00355 0.56 +0.5 48,252 - rhsA MCAODC_00355 0.56 +0.5 48,252 - rhsA MCAODC_00355 0.56 +0.9 48,309 + rhsA MCAODC_00355 0.57 +0.4 48,372 + rhsA MCAODC_00355 0.59 -1.9 48,372 + rhsA MCAODC_00355 0.59 +0.2 48,373 - rhsA MCAODC_00355 0.59 -1.7 48,373 - rhsA MCAODC_00355 0.59 -0.0 48,373 - rhsA MCAODC_00355 0.59 -3.0 48,373 - rhsA MCAODC_00355 0.59 +0.7 48,381 + rhsA MCAODC_00355 0.59 -0.4 48,381 + rhsA MCAODC_00355 0.59 -2.7 48,382 - rhsA MCAODC_00355 0.59 -1.0 48,382 - rhsA MCAODC_00355 0.59 +0.3 48,435 + rhsA MCAODC_00355 0.60 +0.7 48,435 + rhsA MCAODC_00355 0.60 -3.2 48,435 + rhsA MCAODC_00355 0.60 +0.2 48,436 - rhsA MCAODC_00355 0.60 +0.8 48,436 - rhsA MCAODC_00355 0.60 +0.1 48,436 - rhsA MCAODC_00355 0.60 +0.3 48,442 - rhsA MCAODC_00355 0.60 -2.5 48,534 - rhsA MCAODC_00355 0.62 +0.7 48,567 + rhsA MCAODC_00355 0.63 -0.4 48,567 + rhsA MCAODC_00355 0.63 -1.9 48,567 + rhsA MCAODC_00355 0.63 -0.9 48,567 + rhsA MCAODC_00355 0.63 +0.7 48,567 + rhsA MCAODC_00355 0.63 -3.1 48,567 + rhsA MCAODC_00355 0.63 +0.2 48,567 + rhsA MCAODC_00355 0.63 -0.2 48,568 - rhsA MCAODC_00355 0.63 -0.9 48,568 - rhsA MCAODC_00355 0.63 -0.6 48,568 - rhsA MCAODC_00355 0.63 -0.7 48,568 - rhsA MCAODC_00355 0.63 -0.8 48,568 - rhsA MCAODC_00355 0.63 +0.9 48,630 + rhsA MCAODC_00355 0.65 -1.1 48,661 - rhsA MCAODC_00355 0.65 +0.5 48,693 + rhsA MCAODC_00355 0.66 -0.0 48,694 - rhsA MCAODC_00355 0.66 +0.3 48,754 + rhsA MCAODC_00355 0.68 +0.1 48,754 + rhsA MCAODC_00355 0.68 +0.4 48,766 - rhsA MCAODC_00355 0.68 +0.4 48,766 - rhsA MCAODC_00355 0.68 -0.3 48,897 + rhsA MCAODC_00355 0.71 +0.9 49,084 - rhsA MCAODC_00355 0.75 +0.5 49,120 - rhsA MCAODC_00355 0.76 -0.2 49,120 - rhsA MCAODC_00355 0.76 -1.4 49,149 + rhsA MCAODC_00355 0.77 +2.6 49,149 + rhsA MCAODC_00355 0.77 +1.0 49,156 - rhsA MCAODC_00355 0.77 +0.0 49,323 - rhsA MCAODC_00355 0.81 -0.6 49,343 - rhsA MCAODC_00355 0.82 -0.8 49,349 + rhsA MCAODC_00355 0.82 +0.5 49,349 + rhsA MCAODC_00355 0.82 +1.1 49,349 + rhsA MCAODC_00355 0.82 +0.9 49,350 - rhsA MCAODC_00355 0.82 +1.4 49,605 + rhsA MCAODC_00355 0.88 +0.7 49,605 + rhsA MCAODC_00355 0.88 -0.3 49,605 + rhsA MCAODC_00355 0.88 +0.7 49,605 + rhsA MCAODC_00355 0.88 -0.3 49,605 + rhsA MCAODC_00355 0.88 -0.5 49,605 + rhsA MCAODC_00355 0.88 -0.4 49,606 - rhsA MCAODC_00355 0.88 +0.2 49,606 - rhsA MCAODC_00355 0.88 +0.4 49,606 - rhsA MCAODC_00355 0.88 +0.3 49,606 - rhsA MCAODC_00355 0.88 -0.1 49,606 - rhsA MCAODC_00355 0.88 -0.5 49,606 - rhsA MCAODC_00355 0.88 -0.2 49,606 - rhsA MCAODC_00355 0.88 +1.2 49,609 + rhsA MCAODC_00355 0.88 +1.0 49,609 + rhsA MCAODC_00355 0.88 +0.8 49,609 + rhsA MCAODC_00355 0.88 -1.5 49,609 + rhsA MCAODC_00355 0.88 +0.8 49,609 + rhsA MCAODC_00355 0.88 -1.2 49,609 + rhsA MCAODC_00355 0.88 -0.2 49,609 + rhsA MCAODC_00355 0.88 -0.0 49,610 - rhsA MCAODC_00355 0.88 +1.3 49,610 - rhsA MCAODC_00355 0.88 +0.4 49,610 - rhsA MCAODC_00355 0.88 +0.5 49,610 - rhsA MCAODC_00355 0.88 -1.3 49,725 + +0.9 49,726 - +0.6 49,726 - +0.1 49,731 - +0.1 49,731 - +0.6 49,731 - -0.2 49,788 - -0.2 49,805 + +1.3 49,891 - -0.7 49,989 + +0.9 49,989 + -0.5 49,990 - -1.0 49,990 - +0.1 49,990 - -1.3 49,990 - +0.7 49,990 - -2.9 49,990 - -1.3 49,993 + -0.7 49,993 + -0.3 49,994 - -1.7 49,994 - -0.3 50,039 + -0.5 50,039 + -1.0 50,040 - +0.1 50,040 - +0.5 50,143 + -0.2 50,143 + -0.9 50,143 + +0.5 50,143 + -2.7 50,144 - +0.0 50,144 - +0.3 50,144 - -0.6 50,146 + -0.0 50,147 - +0.3 50,147 - +0.3 50,231 + -3.1 50,287 + +0.1 50,288 - +0.4 50,288 - -0.2 50,347 + +0.5 50,348 - -0.2 50,355 - -1.6 50,355 - +2.5 50,389 + -0.7 50,503 - vgrG,tssI MCAODC_00360 0.14 -1.2 50,527 + vgrG,tssI MCAODC_00360 0.15 +0.0 50,527 + vgrG,tssI MCAODC_00360 0.15 -1.2 50,528 - vgrG,tssI MCAODC_00360 0.15 +2.5 50,528 - vgrG,tssI MCAODC_00360 0.15 +0.0 50,537 + vgrG,tssI MCAODC_00360 0.16 -0.2 50,538 - vgrG,tssI MCAODC_00360 0.16 +0.5 50,538 - vgrG,tssI MCAODC_00360 0.16 +0.9 50,569 + vgrG,tssI MCAODC_00360 0.17 +0.3 50,569 + vgrG,tssI MCAODC_00360 0.17 -0.6 50,575 + vgrG,tssI MCAODC_00360 0.18 -0.3 50,576 - vgrG,tssI MCAODC_00360 0.18 +0.2 50,599 - vgrG,tssI MCAODC_00360 0.19 -0.2 50,714 + vgrG,tssI MCAODC_00360 0.24 -0.9 50,715 - vgrG,tssI MCAODC_00360 0.24 +0.6 50,715 - vgrG,tssI MCAODC_00360 0.24 -0.1 50,715 - vgrG,tssI MCAODC_00360 0.24 +0.3 50,773 + vgrG,tssI MCAODC_00360 0.27 +0.5 50,773 + vgrG,tssI MCAODC_00360 0.27 -0.4 50,773 + vgrG,tssI MCAODC_00360 0.27 -0.4 50,777 + vgrG,tssI MCAODC_00360 0.27 +0.0 50,902 + vgrG,tssI MCAODC_00360 0.33 -0.5 50,902 + vgrG,tssI MCAODC_00360 0.33 +1.3 50,992 - vgrG,tssI MCAODC_00360 0.37 +0.2
Or see this region's nucleotide sequence