Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15765

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15755 and A4249_RS15760 are separated by 49 nucleotidesA4249_RS15760 and A4249_RS15765 overlap by 4 nucleotidesA4249_RS15765 and A4249_RS16410 overlap by 7 nucleotides A4249_RS15755: A4249_RS15755 - amino acid racemase, at 3,185,888 to 3,186,565 _RS15755 A4249_RS15760: A4249_RS15760 - nucleoside hydrolase, at 3,186,615 to 3,187,568 _RS15760 A4249_RS15765: A4249_RS15765 - ribokinase, at 3,187,565 to 3,188,413 _RS15765 A4249_RS16410: A4249_RS16410 - helix-turn-helix transcriptional regulator, at 3,188,407 to 3,189,315 _RS16410 Position (kb) 3187 3188 3189Strain fitness (log2 ratio) -2 -1 0 1 2at 3186.603 kb on + strandat 3186.604 kb on - strandat 3186.604 kb on - strandat 3186.620 kb on + strandat 3186.620 kb on + strandat 3186.620 kb on + strandat 3186.620 kb on + strandat 3186.621 kb on - strandat 3186.621 kb on - strandat 3186.621 kb on - strandat 3186.621 kb on - strandat 3186.621 kb on - strandat 3187.237 kb on + strand, within A4249_RS15760at 3187.956 kb on + strand, within A4249_RS15765at 3187.957 kb on - strand, within A4249_RS15765at 3188.108 kb on + strand, within A4249_RS15765at 3188.108 kb on + strand, within A4249_RS15765at 3188.108 kb on + strand, within A4249_RS15765at 3188.108 kb on + strand, within A4249_RS15765at 3188.109 kb on - strand, within A4249_RS15765at 3188.109 kb on - strand, within A4249_RS15765at 3188.109 kb on - strand, within A4249_RS15765at 3188.109 kb on - strand, within A4249_RS15765at 3188.109 kb on - strand, within A4249_RS15765at 3188.177 kb on + strand, within A4249_RS15765at 3188.177 kb on + strand, within A4249_RS15765at 3188.177 kb on + strand, within A4249_RS15765at 3188.177 kb on + strand, within A4249_RS15765at 3188.177 kb on + strand, within A4249_RS15765at 3188.177 kb on + strand, within A4249_RS15765at 3188.177 kb on + strand, within A4249_RS15765at 3188.177 kb on + strand, within A4249_RS15765at 3188.177 kb on + strand, within A4249_RS15765at 3188.178 kb on - strand, within A4249_RS15765at 3188.178 kb on - strand, within A4249_RS15765at 3188.178 kb on - strand, within A4249_RS15765at 3188.178 kb on - strand, within A4249_RS15765at 3188.178 kb on - strand, within A4249_RS15765at 3188.411 kb on + strandat 3188.411 kb on + strandat 3188.411 kb on + strandat 3188.411 kb on + strandat 3188.412 kb on - strandat 3188.600 kb on + strand, within A4249_RS16410at 3188.600 kb on + strand, within A4249_RS16410at 3188.601 kb on - strand, within A4249_RS16410at 3188.752 kb on + strand, within A4249_RS16410at 3188.752 kb on + strand, within A4249_RS16410at 3188.752 kb on + strand, within A4249_RS16410at 3188.752 kb on + strand, within A4249_RS16410at 3188.752 kb on + strand, within A4249_RS16410at 3188.752 kb on + strand, within A4249_RS16410at 3188.752 kb on + strand, within A4249_RS16410at 3188.752 kb on + strand, within A4249_RS16410at 3188.753 kb on - strand, within A4249_RS16410at 3188.753 kb on - strand, within A4249_RS16410at 3188.753 kb on - strand, within A4249_RS16410at 3188.753 kb on - strand, within A4249_RS16410at 3188.753 kb on - strand, within A4249_RS16410at 3188.753 kb on - strand, within A4249_RS16410at 3188.753 kb on - strand, within A4249_RS16410at 3188.753 kb on - strand, within A4249_RS16410at 3188.753 kb on - strand, within A4249_RS16410at 3188.753 kb on - strand, within A4249_RS16410at 3188.753 kb on - strand, within A4249_RS16410at 3188.753 kb on - strand, within A4249_RS16410at 3188.753 kb on - strand, within A4249_RS16410at 3188.777 kb on + strand, within A4249_RS16410at 3188.777 kb on + strand, within A4249_RS16410at 3188.777 kb on + strand, within A4249_RS16410at 3188.778 kb on - strand, within A4249_RS16410at 3188.778 kb on - strand, within A4249_RS16410at 3188.829 kb on + strand, within A4249_RS16410at 3188.829 kb on + strand, within A4249_RS16410at 3188.830 kb on - strand, within A4249_RS16410at 3188.862 kb on + strand, within A4249_RS16410at 3188.862 kb on + strand, within A4249_RS16410at 3188.862 kb on + strand, within A4249_RS16410at 3188.862 kb on + strand, within A4249_RS16410at 3188.862 kb on + strand, within A4249_RS16410at 3188.863 kb on - strand, within A4249_RS16410at 3188.863 kb on - strand, within A4249_RS16410at 3188.863 kb on - strand, within A4249_RS16410at 3188.863 kb on - strand, within A4249_RS16410at 3188.863 kb on - strand, within A4249_RS16410at 3188.863 kb on - strand, within A4249_RS16410at 3188.863 kb on - strand, within A4249_RS16410at 3188.863 kb on - strand, within A4249_RS16410at 3188.863 kb on - strand, within A4249_RS16410at 3188.878 kb on + strand, within A4249_RS16410at 3188.962 kb on + strand, within A4249_RS16410at 3188.963 kb on - strand, within A4249_RS16410at 3189.064 kb on + strand, within A4249_RS16410at 3189.064 kb on + strand, within A4249_RS16410at 3189.064 kb on + strand, within A4249_RS16410at 3189.065 kb on - strand, within A4249_RS16410at 3189.065 kb on - strand, within A4249_RS16410at 3189.065 kb on - strand, within A4249_RS16410at 3189.183 kb on + strand, within A4249_RS16410at 3189.183 kb on + strand, within A4249_RS16410at 3189.183 kb on + strand, within A4249_RS16410at 3189.183 kb on + strand, within A4249_RS16410at 3189.183 kb on + strand, within A4249_RS16410at 3189.183 kb on + strand, within A4249_RS16410at 3189.184 kb on - strand, within A4249_RS16410at 3189.184 kb on - strand, within A4249_RS16410at 3189.184 kb on - strand, within A4249_RS16410at 3189.184 kb on - strand, within A4249_RS16410at 3189.184 kb on - strand, within A4249_RS16410at 3189.184 kb on - strand, within A4249_RS16410at 3189.184 kb on - strand, within A4249_RS16410at 3189.286 kb on + strandat 3189.299 kb on + strandat 3189.300 kb on - strandat 3189.328 kb on + strandat 3189.328 kb on + strandat 3189.329 kb on - strandat 3189.329 kb on - strandat 3189.329 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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3,186,603 + -0.8
3,186,604 - -0.6
3,186,604 - +2.0
3,186,620 + -1.0
3,186,620 + -0.1
3,186,620 + +1.0
3,186,620 + -0.4
3,186,621 - -0.5
3,186,621 - -1.5
3,186,621 - +0.1
3,186,621 - +0.1
3,186,621 - -0.1
3,187,237 + A4249_RS15760 0.65 -1.2
3,187,956 + A4249_RS15765 0.46 -1.7
3,187,957 - A4249_RS15765 0.46 -0.1
3,188,108 + A4249_RS15765 0.64 -1.5
3,188,108 + A4249_RS15765 0.64 -1.4
3,188,108 + A4249_RS15765 0.64 -0.0
3,188,108 + A4249_RS15765 0.64 -0.4
3,188,109 - A4249_RS15765 0.64 +0.3
3,188,109 - A4249_RS15765 0.64 -0.2
3,188,109 - A4249_RS15765 0.64 -0.1
3,188,109 - A4249_RS15765 0.64 -0.6
3,188,109 - A4249_RS15765 0.64 -0.7
3,188,177 + A4249_RS15765 0.72 -0.2
3,188,177 + A4249_RS15765 0.72 -0.2
3,188,177 + A4249_RS15765 0.72 -0.4
3,188,177 + A4249_RS15765 0.72 +0.6
3,188,177 + A4249_RS15765 0.72 -0.4
3,188,177 + A4249_RS15765 0.72 +0.2
3,188,177 + A4249_RS15765 0.72 -0.9
3,188,177 + A4249_RS15765 0.72 -0.2
3,188,177 + A4249_RS15765 0.72 -1.7
3,188,178 - A4249_RS15765 0.72 +0.0
3,188,178 - A4249_RS15765 0.72 +0.7
3,188,178 - A4249_RS15765 0.72 -0.1
3,188,178 - A4249_RS15765 0.72 +0.5
3,188,178 - A4249_RS15765 0.72 +0.6
3,188,411 + -0.0
3,188,411 + +0.3
3,188,411 + -0.0
3,188,411 + -0.1
3,188,412 - -0.5
3,188,600 + A4249_RS16410 0.21 -0.3
3,188,600 + A4249_RS16410 0.21 -0.9
3,188,601 - A4249_RS16410 0.21 -0.1
3,188,752 + A4249_RS16410 0.38 -0.5
3,188,752 + A4249_RS16410 0.38 +0.5
3,188,752 + A4249_RS16410 0.38 +1.0
3,188,752 + A4249_RS16410 0.38 +0.2
3,188,752 + A4249_RS16410 0.38 +0.1
3,188,752 + A4249_RS16410 0.38 +1.9
3,188,752 + A4249_RS16410 0.38 +0.6
3,188,752 + A4249_RS16410 0.38 -0.1
3,188,753 - A4249_RS16410 0.38 -1.1
3,188,753 - A4249_RS16410 0.38 +1.2
3,188,753 - A4249_RS16410 0.38 -1.2
3,188,753 - A4249_RS16410 0.38 -0.4
3,188,753 - A4249_RS16410 0.38 -0.6
3,188,753 - A4249_RS16410 0.38 -0.1
3,188,753 - A4249_RS16410 0.38 -0.7
3,188,753 - A4249_RS16410 0.38 -0.1
3,188,753 - A4249_RS16410 0.38 -0.6
3,188,753 - A4249_RS16410 0.38 -0.3
3,188,753 - A4249_RS16410 0.38 +0.9
3,188,753 - A4249_RS16410 0.38 -1.3
3,188,753 - A4249_RS16410 0.38 -1.5
3,188,777 + A4249_RS16410 0.41 +0.0
3,188,777 + A4249_RS16410 0.41 -1.6
3,188,777 + A4249_RS16410 0.41 -0.6
3,188,778 - A4249_RS16410 0.41 -0.2
3,188,778 - A4249_RS16410 0.41 +0.4
3,188,829 + A4249_RS16410 0.46 -0.4
3,188,829 + A4249_RS16410 0.46 +0.0
3,188,830 - A4249_RS16410 0.47 +0.5
3,188,862 + A4249_RS16410 0.50 +1.1
3,188,862 + A4249_RS16410 0.50 +0.2
3,188,862 + A4249_RS16410 0.50 -0.1
3,188,862 + A4249_RS16410 0.50 -0.3
3,188,862 + A4249_RS16410 0.50 -0.2
3,188,863 - A4249_RS16410 0.50 -2.1
3,188,863 - A4249_RS16410 0.50 -0.1
3,188,863 - A4249_RS16410 0.50 +0.5
3,188,863 - A4249_RS16410 0.50 +0.4
3,188,863 - A4249_RS16410 0.50 -0.9
3,188,863 - A4249_RS16410 0.50 -2.3
3,188,863 - A4249_RS16410 0.50 +0.3
3,188,863 - A4249_RS16410 0.50 +0.2
3,188,863 - A4249_RS16410 0.50 +0.2
3,188,878 + A4249_RS16410 0.52 +0.1
3,188,962 + A4249_RS16410 0.61 -1.3
3,188,963 - A4249_RS16410 0.61 -0.0
3,189,064 + A4249_RS16410 0.72 -0.5
3,189,064 + A4249_RS16410 0.72 -1.2
3,189,064 + A4249_RS16410 0.72 +0.8
3,189,065 - A4249_RS16410 0.72 +0.0
3,189,065 - A4249_RS16410 0.72 +0.0
3,189,065 - A4249_RS16410 0.72 -0.1
3,189,183 + A4249_RS16410 0.85 -1.0
3,189,183 + A4249_RS16410 0.85 +0.4
3,189,183 + A4249_RS16410 0.85 +0.8
3,189,183 + A4249_RS16410 0.85 +1.7
3,189,183 + A4249_RS16410 0.85 +0.3
3,189,183 + A4249_RS16410 0.85 +0.3
3,189,184 - A4249_RS16410 0.85 -0.7
3,189,184 - A4249_RS16410 0.85 -0.7
3,189,184 - A4249_RS16410 0.85 +0.6
3,189,184 - A4249_RS16410 0.85 -1.1
3,189,184 - A4249_RS16410 0.85 +0.3
3,189,184 - A4249_RS16410 0.85 -0.3
3,189,184 - A4249_RS16410 0.85 +0.6
3,189,286 + -0.7
3,189,299 + -0.7
3,189,300 - -0.9
3,189,328 + -0.1
3,189,328 + +1.3
3,189,329 - +0.9
3,189,329 - -1.5
3,189,329 - -1.3

Or see this region's nucleotide sequence