Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15200

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15195 and A4249_RS15200 are separated by 161 nucleotidesA4249_RS15200 and A4249_RS15205 overlap by 4 nucleotides A4249_RS15195: A4249_RS15195 - DcaP family trimeric outer membrane transporter, at 3,072,199 to 3,073,551 _RS15195 A4249_RS15200: A4249_RS15200 - response regulator transcription factor, at 3,073,713 to 3,074,321 _RS15200 A4249_RS15205: A4249_RS15205 - PAS-domain containing protein, at 3,074,318 to 3,077,704 _RS15205 Position (kb) 3073 3074 3075Strain fitness (log2 ratio) -2 -1 0 1at 3073.138 kb on - strand, within A4249_RS15195at 3073.223 kb on + strand, within A4249_RS15195at 3073.224 kb on - strand, within A4249_RS15195at 3073.235 kb on + strand, within A4249_RS15195at 3073.236 kb on - strand, within A4249_RS15195at 3074.015 kb on + strand, within A4249_RS15200at 3074.016 kb on - strand, within A4249_RS15200at 3074.319 kb on + strandat 3074.319 kb on + strandat 3074.320 kb on - strandat 3074.320 kb on - strandat 3074.320 kb on - strandat 3074.320 kb on - strandat 3074.320 kb on - strandat 3074.320 kb on - strandat 3074.323 kb on + strandat 3074.323 kb on + strandat 3074.323 kb on + strandat 3074.323 kb on + strandat 3074.323 kb on + strandat 3074.324 kb on - strandat 3074.324 kb on - strandat 3074.324 kb on - strandat 3074.981 kb on - strand, within A4249_RS15205at 3075.195 kb on - strand, within A4249_RS15205

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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3,073,138 - A4249_RS15195 0.69 -1.8
3,073,223 + A4249_RS15195 0.76 -0.3
3,073,224 - A4249_RS15195 0.76 -0.2
3,073,235 + A4249_RS15195 0.77 -0.1
3,073,236 - A4249_RS15195 0.77 -2.3
3,074,015 + A4249_RS15200 0.50 +0.6
3,074,016 - A4249_RS15200 0.50 +1.0
3,074,319 + +0.7
3,074,319 + -1.0
3,074,320 - -0.1
3,074,320 - -0.8
3,074,320 - -1.4
3,074,320 - -0.4
3,074,320 - -1.7
3,074,320 - +0.4
3,074,323 + -0.2
3,074,323 + -0.5
3,074,323 + +0.2
3,074,323 + -0.3
3,074,323 + +0.2
3,074,324 - -0.2
3,074,324 - -0.7
3,074,324 - -0.4
3,074,981 - A4249_RS15205 0.20 +1.0
3,075,195 - A4249_RS15205 0.26 -0.8

Or see this region's nucleotide sequence